Leucoraja erinaceus (little skate): 129705039
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Entry
129705039 CDS
T09122
Symbol
chd9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
leri
Leucoraja erinaceus (little skate)
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
leri03036
]
129705039 (chd9)
Chromosome and associated proteins [BR:
leri03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
129705039 (chd9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HDA2-3
HTH_Hrp3
Motif
Other DBs
NCBI-GeneID:
129705039
NCBI-ProteinID:
XP_055504397
LinkDB
All DBs
Position
17:6432349..6625144
Genome browser
AA seq
2985 aa
AA seq
DB search
MTDPIMDFLDDANLFGGGLEGLADDGFAQQGPVSLVDELNLSADFEPLQVEPLHHVPETQ
TPEKPNFEQLQTFDSIKLHQLNQPFNLVGTSNESSVLSPHSQFHCSPDHQNQTNGLFPSA
HNENSAQSFVDGSPMWGHQSPISNQNGSPFHSLQGHSQSVQQMTPFLTHHDFALHQSNPQ
QQQPASVQPQQAINHFTTGQKTLNQGSQFMGVHGSASPHMNLIGQPTTTVSSSIQHPVTV
QQFNQPATTANPLHPIRFTSSASHGGVPQNVSFSSSSREMTTCSINNTNQFTPQYPYPNN
NLANGNNLTSTTILSTHQAAQGMTCFPGSDAFTVPAGSNQESVHHMLSPNSSAKQKVLQP
MHSVHTQGNFSPSSIPSVPTDVPITTSSVSKVKISIASTQGKPVGISSLQGNQFPQRQTH
PLTRMDTDDVFQDQLLTSFGNSGQGQRDLIPVPRPMVSQQVKHHSNMQQEMVIQHQLHQE
PAAASCVPSQHWQASITNQHLPTKGSMQLTLQRQPPSSQTTVDGSSPQAKQIIKSQNAQL
MTGNKQKKKEMQNKQEKANRIISEAIAKAKARGEQNIPRVVNPACLSTGSARKEERKSGK
SKAKQKDKESKNSKTGLCSKPKDIAKISKIIITLGKKKKRRNDLSAEGLDSEQITTASIK
KRRNDISAEGSDAEQMPAPSIKKEPIAGCQKRRSNRQVKRKKYNEDTGMKVSDDDDGLSA
KGKTRAGAVLHAVQPVQLFVENPSEEDAAIVDKIMASRLVKKEVANGHMADVEEFFVKYK
NYSYLHCEWATEAQLTKDKRIHQKVKRFKVKQAQRGHFFAAMDDEPFNPDYVEVDRILEY
SCCEDTDTGEAVVYYLVKWCSLPYEDSTWELREDVDQAKIEEFERLQQVKPSVKRVERPP
PTVWKKLEISREYKIGNELREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSITFLDE
ICLTGLGGPFLIIAPLSTIANWEREFRTWTDLNVIVYHGSMISRQMIQQYEMYFRDSEGR
ILRGTYRFTAMITTFEMILGGCPELNVIDWRCVIIDEAHRLKNKNCKLLEGLKIMNLEHK
VLLTGTPLQNTVEELFSLLHFLEPQQFSSENTFMQEFGDLKSEAQVQKLQAILKPMMLRR
LKEDVEKKLAPKEETIIEVELTNIQKKYYRAILERNFTFLSKGAGQANVPNLVNTMMELR
KCCNHPYLIKGAEEKILGEFRELHSTAVSHFHLQAMIQSAGKLVLIDKLLPKMKAGGHKV
LVFSQMVRCLDILEDYLIQKRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAG
GLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDKAS
LKLGLDKAVLQSMNGRENSVGGMQQMSKKEIEDLLRRGAYGAIMDEEDEGSKFCEEDIDQ
ILMRRTKTITIESEGRGSTFAKASFVASGNRSDIALDDPNFWQKWAKKAEIDLEAMHGKN
SLVIDTPRVRKQTRPYNAAKDELAELSEAESDSEDQPKLRRPYDRSHAYGRTECFRIEKN
LLIYGWDRWKDILSHGRFKRRLVEQDVETICRALLVYCLAHYRGDEKIKSFIWDLITPIE
DGQTKELQNHLGLSAPVPRGRKGKKVKNQGSTLDMQKAEWLRKYNPEHLLQDEGYKKHLK
HHCNKVLLRVRMLYYLKQEVIGDQLEKVLEGVDACEIDIWVPEPEQSEMPAEWWDMNADK
SLLIGVFKHGYEKYNTMRNDPALCFLERVGKPDEKAIAAEQRGNDTFADCAEGYGYSQST
WDGEDPEYKPTQPLFKDEMEDVASSPGDLMIMDGSLGEGDLLYWPQASALTTRLRRLVTA
YQRSNKKEQVKQDAQTKGDRRKRLCADTVKAKEAAKIEKQQRWTRREEADFYRVVSTFGI
VYDPDKQKFDWTKFRAIARLNKKTDESLQKYLYAFVAMCRRVCRLLPKEKEELLDPPVFI
QPITEERASRTLYRIELLRKVREQVLRHPQLDERIKLCQPGPDLPEWWECGRHDKELLIG
AAKHGVSKTDYHIFCDSELSFMLAQRNCSQNKIAQSRSSTPLLHHQYPSSSSPLHLLPKV
QDKKSQLEIEVVKCERTTVVKKEPDSSDDEDAMDIEVKSKVKLEQFVSGLQPQNRLDKKP
GIKLDPDPDGCMVAARTQPLTPNLVLNKCKTSRQRSASSSDSDSDSDNSSSSSPSSSSSS
SSSRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSDDSDSDSDDKQTAAGSKAAQHLKPYD
EDSAASLSIAQDETQDSFLPENGRPDIQFLQGGHRFAASCWSKDRVMINRIDSICHAVLK
GNWIPSRRSYDYNAVTSSYTTKLLDSPSAMGDLNDSAVFTSGSQGVKEDNSLLSQFTKVK
KHVREKEFTVKINDESGLKLTFQKQRLSQKRALETEEGTSDQRQYMAQLHDLYSAPNSSQ
ELAVDLSKSLSGVGSSIPLSSSMLFNANIPGSVATVIPHHKSVLSGASQQITRHCTNGIL
LDTQPVVKKRRGRKKNVEGLDILFMNRNKSLQPDHLVVSNTQTAFNAFQGQHDAESRVSV
INVKDGTRLAGEDAPKRKDLEDWLKSHSDYVADVSAHVPKTDKPEIVGERPKQKRHRCRN
PNKIDVKSLTGEERVPVINRRNAKKMGGSLAPPIKDLARWLQENLDFGIAPEWANVVKQS
GFLPANMFDRILTGPVVREEVSRRGRRPKSELTKAAAAAAAAMTVNPLVTNGLLAGMDLS
SLQSLQQNLQNLQSFQLTAAGLMGFPAGLPSAGDAKSLASMFPMMLSNMAGFGMGGLLHK
PSEATLESKRGSGTVDSRKPTDGTNERTVKQSVDLCSEISVSNSATSSPKKLTPTTSASA
SATAGSPLAINPLLSSMLYPGILLSPGLNISIPGFPQTNMFNVQTNKHTDVAMSKPTKET
AEHPEGEDHNSSHENSGDDASEKAASSSSSDNTTQPDDSGSSEED
NT seq
8958 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcccatcatggattttttggatgatgccaatttgtttggtggaggattagaa
ggcttagcagacgatgggtttgcacaacaaggacccgtttcattggttgatgagcttaac
ttgagtgcagattttgaacctttgcaagttgagccattacatcatgttccagagacacag
acgccagaaaaacccaattttgaacagttacagacatttgattcaataaaacttcatcaa
ttgaaccagccgtttaatttggtgggcactagtaatgagtctagtgtactgtctccacat
tcccaatttcattgttcacctgatcatcaaaatcagacaaatgggctgtttccttctgcc
cataatgagaatagtgcacagtcgtttgtcgatggaagtccaatgtggggtcaccaaagc
cccatttcaaatcagaatggatcaccattccattccttgcaaggccattcgcagtctgta
caacagatgaccccctttttaacgcaccatgactttgctctgcatcagtcgaacccccaa
cagcagcagcctgcatcagtgcagcctcagcaggctataaaccatttcactacaggacag
aaaactctaaatcaaggcagtcagttcatgggtgtccatggatcagcttcacctcacatg
aatctcattgggcaaccaactacaactgttagttcgtccattcagcaccctgttacagtg
cagcagtttaaccaaccagccaccactgcgaatcccttgcaccctattagattcaccagt
agtgccagtcacggtggtgtgcctcagaacgtcagcttttcaagttcttcgcgagaaatg
accacgtgctctatcaacaatacaaaccagtttacccctcagtatccctatcctaacaac
aacctcgctaatggcaacaatctgacatctaccacaatactttctactcatcaggccgcc
cagggcatgacttgtttccctgggagtgatgcattcacggtgccagcagggtccaaccag
gaatcagtacatcatatgcttagtcccaacagttctgctaagcaaaaggtactgcagcct
atgcattctgtacacactcagggaaatttcagtccatcaagtataccctctgttccaact
gatgtgccaataacaaccagctcggtgtccaaggtgaaaatttctattgcatcgacccaa
gggaaaccggttgggatttcatctctgcagggaaatcaatttccacagcgccagacacat
cccttgaccaggatggatacagatgatgtgtttcaagatcagctgttaacatcttttggg
aactctggccaaggccagagagatttaatcccagttccaagaccaatggtttcccaacag
gtgaaacatcattcaaacatgcaacaggagatggttatccagcatcagttgcatcaagaa
ccagcagcagccagttgcgtcccttctcaacattggcaagcatcgattactaaccaacat
ctgccgacaaaaggatctatgcagttgaccttgcaacggcagccaccttcctcccagacc
actgttgatggttcgagtccacaagcgaagcagattatcaagtcacagaatgcacagctg
atgactggaaacaaacagaaaaagaaggagatgcagaataagcaagagaaagccaatcgg
atcatatcggaagcaatagcgaaggcaaaggcacgtggagagcagaatattcccagggtg
gtaaacccagcctgtttgtccactgggtctgctcgaaaggaagaaaggaagtcaggaaaa
agcaaagcgaaacagaaggataaagaatcaaaaaactctaaaaccggtttatgttccaag
ccaaaggatatcgcaaaaataagcaaaattataatcacactgggcaagaaaaagaaaagg
aggaatgatttgtcagcagaggggttggactctgagcagattaccacagcatccataaag
aaaagaaggaatgacatatcagcagagggatcagatgctgaacaaatgccagcgccatca
ataaagaaagaacccatcgctggatgtcagaaaagacgatcgaacagacaagtaaaacga
aagaaatacaacgaagacactggaatgaaggtttctgatgatgatgatggcttgtctgcc
aaaggaaaaactagggctggcgcggttctacatgctgtgcaacctgtgcaattatttgtg
gaaaaccccagtgaagaagatgctgcaattgtggataaaattatggcctcaagactggtg
aaaaaagaggtggccaatggacatatggcagatgttgaagaattttttgtaaagtacaaa
aattactcatatctgcattgtgaatgggctacagaagcacagttgacgaaagacaaaagg
atacatcagaaagtgaaacgcttcaaggttaaacaggcacagagaggtcatttcttcgct
gcgatggatgatgagccattcaatccagactacgttgaagtcgatagaatattggaatac
tcgtgttgtgaagatactgacaccggagaggctgtggtttactatttggttaaatggtgt
tcactgccatacgaggatagcacttgggagctcagagaagatgtagatcaagcaaagatt
gaggagtttgaacgattgcaacaagtaaagccttctgtgaagcgtgtggaacggcctcct
cccactgtttggaagaagcttgaaatatccagggaatacaagattggtaatgagctcagg
gagtaccagttggaaggagttaattggctcttgttcaactggtataacaggcaaaactgc
attcttgcggatgaaatgggtttaggcaaaactatccaatctattacattcctcgacgag
atctgtctgactggcctgggcggtccttttctcatcattgcgcctttgtctacaattgca
aactgggaacgagaatttcgcacatggacagacctgaacgtcattgtttatcacggcagt
atgatcagcagacaaatgattcaacagtatgaaatgtacttccgggactcagagggtcgc
atccttcggggaacatacagatttaccgccatgataactacttttgagatgatcctgggt
gggtgtccggagctgaacgtaattgattggcgttgtgtgatcattgatgaggctcaccga
ctgaaaaataaaaactgcaaactactggaaggactgaaaatcatgaatctggaacataag
gtgcttcttacaggaactccattacagaacacggtggaggagttgttcagtttgcttcac
ttcctggaacctcagcaattctcatccgaaaatacattcatgcaggaatttggagatcta
aagagtgaagcgcaggtgcaaaagcttcaggcaatattaaagcccatgatgctgcggcgt
ttgaaggaggatgtggaaaagaagctagcccccaaagaggagacgatcattgaagtggaa
ctaaccaacattcaaaagaaatattatcgtgcaatcctagaaaggaactttactttccta
tccaaaggagctgggcaggcaaatgtgccaaaccttgtaaacacaatgatggagctcaga
aagtgctgcaatcatccctaccttataaaaggtgccgaagaaaagattctcggagagttc
agagagctacacagtacagctgtttcacattttcacctgcaagcaatgatccagtcagct
ggtaaactggtcctaattgacaagctgcttcctaagatgaaagcagggggtcacaaagtt
cttgtcttctcgcagatggtacgctgcttagacatccttgaggattatcttattcaaaaa
aggtacccatatgagcgcattgatgggagagttcgaggaaacttgcgacaggcagcaatt
gaccgatttagcaagccggattcagatcgctttgtgttcttactgtgcacgagagctgga
ggtttagggataaatcttactgctgcagacacatgtatcatttttgattcggactggaat
cctcagaacgaccttcaggctcaagctcgatgtcaccggatcggtcagaacaaggctgtg
aaagtttatagactgataactcgaaactcttatgaacgggaaatgtttgacaaggccagc
ctgaagctgggtcttgacaaagctgtgctgcaaagtatgaatggacgggaaaatagcgtt
ggtgggatgcaacagatgtccaagaaagaaattgaagacttgcttcgtaggggtgcctat
ggtgcaattatggacgaagaagacgaaggctcaaagttttgtgaagaggatatcgatcag
attcttatgcgacgtacaaaaacaattacgattgaatctgaagggagaggctcgacattt
gctaaggcaagttttgttgcatcgggcaacagaagtgatattgctctggacgatcccaac
ttttggcagaaatgggcaaagaaggcagaaattgatcttgaagctatgcatggaaagaac
agcttggtaattgacactccaagagtcaggaaacaaaccagaccttacaatgctgcaaaa
gatgaactggcagaactatcggaagcagaaagtgacagtgaagatcaacccaaactgcgc
cggccctatgaccgctctcatgcatatggaaggacagagtgcttcagaattgagaagaat
ctgctgatatatgggtgggatcgttggaaagacatcttatcacatggacgtttcaagaga
cggctggttgaacaggatgtggagaccatttgccgagcgctcttggtgtactgccttgct
cactacagaggagatgaaaaaataaagagttttatctgggatcttattaccccaatagag
gatggacaaacaaaggaactacaaaaccacctgggcttgtcagcaccagttccgagaggc
cggaaagggaagaaggtgaagaatcagggaagcacgcttgacatgcagaaagctgagtgg
ctcaggaagtataatccagaacacctgcttcaagatgaaggctacaaaaagcatttaaaa
caccactgcaataaggtactgctgcgagtgagaatgttgtattatctaaagcaggaagta
attggtgaccaattggaaaaggtgcttgaaggggtcgatgcttgtgagattgatatttgg
gttcctgagccagaacagtctgagatgcctgccgaatggtgggacatgaatgctgacaaa
tctctgctcattggcgtcttcaaacatggctatgagaaatataacacaatgagaaatgac
cctgcactctgtttcttggagagagttggcaaacccgatgagaaagcaattgcggcagaa
cagaggggaaatgatacctttgctgattgtgcagaggggtacggttactctcaatcaaca
tgggatggtgaagacccagaatataaaccaactcaaccattattcaaggacgaaatggag
gatgttgcatcttctcccggagatctgatgattatggatggatctttgggagaaggcgat
ctgctctattggccacaagcatccgctttaacaacgcgcttgcgtcgacttgtaactgcg
tatcagcggagtaacaagaaagagcaggtgaaacaggatgcccaaacaaaaggggacagg
agaaaaagattatgtgcagacactgtgaaagctaaagaggctgctaaaatcgagaagcag
caaaggtggacgaggcgggaagaggctgatttctacagagttgtgtccacttttggcatt
gtgtatgatccagacaaacagaaatttgactggaccaaattccgagctatagccaggcta
aataaaaagacggacgagagtttgcagaagtacctctatgcttttgttgccatgtgtcga
agagtttgtcgcttactgcccaaagagaaagaagagcttctcgacccacccgttttcata
caacccatcactgaagagcgcgcgtccaggacactttatcggattgagttgctgcgtaaa
gtgcgagagcaagtccttcgccacccgcaacttgatgagaggataaaactgtgccagccg
ggtccagacctgcctgagtggtgggagtgcgggaggcatgacaaggaattgctcatcgga
gcagccaagcacggcgtcagcaagactgattatcacattttctgtgattcggagctgtcc
ttcatgctggcccaaagaaactgtagccagaacaaaatagcccagtcgcgaagttccacg
ccactcttgcatcatcagtacccatcgtcttcctcgcctctacatctactgcctaaggtg
caggataaaaaaagtcagctcgagattgaagtagtgaagtgtgaaaggacaactgttgtc
aaaaaggaaccagattcatctgatgacgaggatgcgatggacattgaagtgaagagtaaa
gtcaaattggaacagtttgtgagtggcttgcagccgcagaacaggttggacaagaaacct
gggattaaattggaccccgatcctgatggctgcatggtcgcagcaaggactcagcccctc
acaccaaacttggtgctcaacaaatgtaaaacaagccgacaacgttcggcctccagctca
gactccgactccgactctgacaattcttcgtcttcgtcaccatcgtcatcatcatcatca
tcctcgtcccggtcttcatcttcctcctcctcttcctcgagctcttcctcgtcctcatcc
tcctcttcttcatcatcctcctcttcctcctcctcctcttctgatgacagtgacagcgac
agcgatgacaagcagaccgcagcaggcagtaaagcggcacagcacttgaagccctatgat
gaagatagtgcagcatctctcagtattgctcaggatgagacacaggacagctttctccca
gaaaatggaaggcctgacatccagttcctgcagggtgggcacaggtttgctgcctcctgc
tggtcaaaggatcgcgtaatgatcaacagaattgatagcatatgccacgcagtattgaaa
ggaaattggattccatcaagaagaagttatgactacaatgctgtgacatcttcttacaca
acaaaattacttgatagcccctctgccatgggagatttaaatgattctgctgtttttaca
tctggaagccagggtgttaaagaagataattctctattgtcgcagttcacaaaggtgaag
aagcatgtgcgagaaaaggagtttacagtgaaaatcaatgacgaaagtggattgaagtta
acttttcagaagcaaagactcagtcagaagagagccctcgaaactgaagaagggacctca
gatcagcggcagtacatggcacagcttcacgatttgtactctgctcctaacagcagtcag
gaactggctgtggacctctcaaaatcattatcgggagttgggagttcaattcccttgtca
tcctccatgttgtttaatgccaatatacctggtagcgtcgctacagtgatccctcatcat
aaatcggtattatcaggtgcttctcagcagattacaagacactgtacaaatgggatactg
ttggatacccagccagtagttaaaaagagaagaggaaggaaaaagaacgtggaaggactg
gacattctgttcatgaaccgtaacaagtcattgcagcctgatcatttggtggttagcaac
acacaaacagcatttaacgcatttcaaggacaacatgatgctgaaagtcgtgtctcagtt
attaatgtgaaagatggcacaagactcgcaggggaagatgctccaaaaagaaaggatttg
gaagactggctcaagagccactcggactacgtggcagatgtgtcagcccatgttccaaaa
accgataaacccgagattgtgggtgagcgaccaaagcaaaaaagacatcggtgcagaaac
cctaacaaaatagatgtcaaaagcctgactggagaagaacgggtgcccgtcatcaataga
agaaatgcaaagaagatgggtggctcgctagcacctccaatcaaagacctggcaaggtgg
ttgcaggaaaatctagattttggaattgctccagaatgggcgaatgtggtaaagcagtca
gggtttttaccggccaatatgtttgaccgcatccttactggtcctgtggtccgagaggag
gtcagtcgaagaggccggcgtccaaagagcgagctcaccaaagctgcagccgcagccgcc
gcggcaatgactgtcaatccactcgtcaccaatggacttcttgctggaatggacctaagc
agcctccaaagcctgcagcagaatctccagaacttgcaatctttccagctgacggcagcg
ggattgatgggattcccggccggccttccgtctgcaggagacgctaaatccctggcgtcg
atgttccctatgatgctctccaacatggcgggctttggcatgggaggtttgttacacaaa
ccctctgaagctactctggagagtaagagaggaagtggcactgtggactcccgcaaacca
acagacgggacaaatgaaaggacggtgaaacaaagtgtggatttatgtagtgaaatctct
gtgtcaaattccgctacatcctctccgaagaagctgacaccaaccacaagtgcttctgcc
tcagccactgctggcagtcccctggctattaatccactcttatctagcatgctttacccg
ggcattcttctgtctccaggccttaacatatcaatcccaggattcccccagaccaatatg
tttaatgtgcagactaacaagcatacagatgtagccatgtccaaacctacaaaggagact
gcagaacatccagagggagaagaccataattcttcacatgaaaacagtggggatgatgca
tcggagaaagccgcatcttcatccagcagtgacaatacaactcagcctgatgattcagga
tccagtgaagaagactga
DBGET
integrated database retrieval system
