Leucoraja erinaceus (little skate): 129705093
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Entry
129705093 CDS
T09122
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129705093 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
leri03019
]
129705093 (edc4)
Messenger RNA biogenesis [BR:
leri03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129705093 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
129705093 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
Beta-prop_EDC4L
WD40
WD40_WDHD1_1st
Beta-prop_HPS5
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_Prp19
WDR55
Beta-prop_EML_2
EIF3I
Motif
Other DBs
NCBI-GeneID:
129705093
NCBI-ProteinID:
XP_055504464
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All DBs
Position
17:10854900..10917613
Genome browser
AA seq
1400 aa
AA seq
DB search
MASPPPPPTSASKMDIQNATQHLRDMLKLDRVSESKVDGQKKTTSYNGELNGLLVPDPIA
AGDGPVLRESNHANVHRLKLQENQEIYLSGDDSSNCVISAKEVEIVASNDSSVSNKARGS
NKVKIQPVAKYEWEQKYYYGNLIAVSNQYLAYTIRGVSSVGMVRVLSIGTAERTLLKGFT
GGVADLGFAHLNSNQLACVDEAGNLFVWQLNDENGKIQEKIVVHIKRPNGTPLNANRRII
WCPYIPEENEENDEGSQTLAVLHEDRAEVWDLDILRSSNNTWPVEATDMKEGFIIVKGHT
ARISEGALSPDGTVLATASHDGYVKFWQIYIEGQDQPRCLHEWQPHDGRPLSCLLFCDNH
IKQDPEVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFKPDSFNTNVQPSLKASLDLSA
EYLILSDVQRKVLYVMELHQNQDDGKAHFVSISEFLLTHPVLSFGIQDVSRCRPRHTEVL
PAEEDSETLSTEGNPGPVETSVVQIKLYCVHTKTLQDVQIYFQPHQNAEESMIMPSAISN
EDFTFPDHLTDVSIEGASSDKGSGRGSQHDLRRIVDLPAPADFLSVANDVKPKLMTPDAF
MTPSASLQQISVSPGSSVSTLTAVTGLSTSSANETGASRPAEDLCLSPKVTLENVSLSGS
TGNSVQASPRSNSVQLIPGLSDQLPSKPLQVPGANSLLPLELQPVDPLCVPQSSPTRERS
PDVISSASTAMSQDIPEIASETLQRAFAGSVLPSDVLESNHHMDSMVSAASALHLLSPRS
RPNSEHSHHSLDMPQKEVERLSTPSLLESVLSQDNAAGDNVASQPWPAAPDITRETRNSI
NESSREDMQEKHKNSTFHRHPYQLHQHDSQDASAEQSDHDEEVASLASTTCSFGSKSASH
RLPVKDWKSKLSPRSSPKLKRKSKKEDGETTQSPRSEQQQQFNTNQHEELLCLIRSQQRE
LCELRQNQLELVQRLTDHMDAVQGSIMGHVERIMVTQQEHEQRRTDRVLAEGHERNGQFQ
EQLSNQLSQTLANSISNRIEKTVRDEMKKSLPQSISKCLEPVSGQLNNQIATKLAAIEGV
LKENVTKMVKSKNTTESIGRAAADALQGPIQTTYREAFQSIVVPVFEKACQSMFQQINDS
FKQGTQEYIQQLEIHLQSKKAQEQESRDPMVTQLQQMIDHFQNATDHLAATITNGMRSEM
QHQLHIIVGNLQESILTQVQRIVKGEVGLAMKEQQVVVASSIMQAMRSAAGTPIPSTHVD
FQSQQAHILQLLQQGQLNQAFQQALTASDLNLVLYVCETVDSHLVFGQHPCPLTQPVLLS
LIQQLSTDLNSRTELKLSYLEDAVMNLDHTDPVARDHMGSVLNQVRQKLYQFNQADPHNN
VSKRARRLMMMLQGLVTPLS
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atggcttccccgccgccgccaccaacctccgcttccaagatggacatccagaacgccacg
cagcaccttcgcgacatgctcaagctggaccgggtgtccgagtcgaaggttgatggccaa
aagaaaacaacgtcctacaatggagaactgaatgggttgttggtaccagatcccattgca
gctggagatggacctgttctcagagagtcaaaccatgcaaatgttcacaggctgaagcta
caagaaaatcaagagatatacctgtctggtgatgacagctcaaattgtgttatatctgcc
aaagaagtggaaattgtagcgagcaatgattccagtgtcagcaataaggctaggggtagc
aacaaggtaaaaatacaacctgttgcaaaatatgaatgggagcagaaatattactatggc
aaccttattgctgtgtctaatcagtatttggcttatactattcgaggggttagtagtgtt
ggcatggtacgggtattgagtattggtacggccgagcgaactttactcaagggatttact
ggtggtgttgccgatttgggttttgcacacctcaactccaaccagctagcatgtgttgat
gaggcaggcaacctatttgtctggcaactgaatgatgaaaatgggaaaatacaggaaaaa
attgtagtgcacataaagagacccaatggaacacctttaaatgcaaacaggagaatcatc
tggtgcccctatattccagaggaaaatgaagaaaatgatgaaggaagccaaacacttgct
gttttacatgaagatagggctgaggtctgggatctggatattctaagaagcagcaataat
acctggcctgttgaggccacagatatgaaggaaggctttatcattgtgaaggggcacacg
gcgaggatcagtgaaggtgcattatcgccagatggaacagtccttgcaactgcaagtcat
gatggatatgtaaagttttggcagatctacatagaggggcaagatcagccaaggtgtctt
catgaatggcagccccatgatggtaggccattatcatgccttctcttttgtgacaatcac
ataaagcaggatccagaagtccctttctggcgtttcttgatcactggagcagatcagaac
agggagctgaagatgtggtgtacagtgtcatggacttgtttacaaaccatcaggtttaag
cctgactctttcaataccaatgtgcagccaagtctgaaagccagcttggatctgtctgca
gaatacttaatcctcagtgatgtacagagaaaagtgttgtacgtgatggagctacatcag
aaccaggatgatggcaaagcccactttgtctccatatccgagtttttgcttacccaccca
gtgctcagtttcggcattcaggatgtcagcagatgtcggcccaggcacacagaggttcta
cccgctgaggaagacagtgaaactttaagtacagaaggaaatcctggccctgttgaaact
tcagtcgtacagataaaattgtactgtgtacacaccaaaacacttcaagatgtgcaaatt
tatttccaaccacatcagaatgcagaagaatctatgataatgccctctgctatttccaat
gaagatttcacatttccagaccatctaactgatgtgagcattgaaggtgcatcgtctgat
aaaggctctggtcgaggttctcaacatgatctgcgacgtatagttgatcttccagcacct
gcagattttctttctgttgccaatgatgtgaaaccaaagttaatgactccagatgccttc
atgactccgagcgcttcgttgcaacaaatttctgtgtcaccaggaagtagcgtaagcact
ttgactgcagtgactggtttgagtacaagttctgctaatgagacaggagcatcaagacct
gcggaagatttgtgcctaagtccaaaggtgacattagagaatgtgtctctcagtggtagc
acaggcaacagtgtccaagctagtcccagaagcaattctgtacagcttatcccaggactt
tctgaccagcttccttcaaaacctcttcaggttcctggtgctaactcgttactacctttg
gagcttcagcctgtggatcccctttgtgtgcctcaaagttcaccaacacgggaacgttcc
cctgatgtgatctcttctgcatccacagcaatgtctcaggacattccagaaatagcctca
gagacccttcagcgtgcatttgcgggttctgttttacccagtgacgttttggagtctaac
catcacatggatagcatggtctctgcagcttcagccctgcatctgttatctccaagaagt
aggcctaactcagaacatagtcatcactcattagatatgcctcagaaggaagtggaacgg
ctgagcactccatcattattggaatctgtcttgtctcaggataacgccgcaggggacaat
gtcgccagccaaccttggccggcagcacccgacattactcgcgaaactcgtaacagtatc
aacgagagctccagagaggacatgcaagagaaacacaagaattccaccttccatcggcat
ccataccaactacaccagcatgacagtcaggatgccagtgctgaacagagtgatcatgat
gaagaagttgcaagtcttgcttccacaacatgcagctttggttcaaagtctgcttcgcat
cgacttccagttaaagactggaaatcaaaactatctccacgatcctctcccaaattgaag
agaaaaagcaaaaaggaagatggggagaccacacaatccccacggtcagaacaacagcaa
cagttcaacacaaaccaacatgaagagttgctgtgtctaatacgcagtcaacagagggag
ctctgtgaattgagacagaatcagttggaacttgtgcagaggctcactgatcacatggat
gcagtacagggctcgatcatgggtcacgtcgagcgaattatggtcacacagcaagaacat
gagcagaggcgaacagacagggtcttggcagaaggacatgaaagaaatgggcagtttcag
gaacagttgtctaatcaactatctcagactttagcaaattctatcagtaatcgtatagaa
aagactgttcgggatgagatgaagaaaagcctaccacaatctatttccaaatgtttggag
cctgtatctggtcagttgaataatcagattgcgaccaaacttgcagcaattgaaggagta
ttaaaagaaaatgtaacaaaaatggtaaaatctaagaacactacagagagcattggaaga
gctgcagctgatgccttgcaaggcccaatacaaactacttacagggaagcattccagagc
atagttgtaccagtgtttgaaaaagcatgccagtcaatgttccagcaaataaacgacagc
ttcaaacagggaactcaagaatatattcagcaacttgagatacaccttcaatcaaagaag
gcccaagagcaagagagtagagatccaatggtcactcagctacagcaaatgattgaccat
ttccagaatgccacagatcatcttgctgctaccatcacaaatggtatgcgttccgaaatg
caacatcagcttcacatcattgttggcaatttgcaggaatccattctaactcaagtgcag
agaattgtgaaaggagaagttggcctagcaatgaaggaacaacaggttgttgttgcttcc
agcatcatgcaggccatgcgatcagcggccggcaccccaattccatcaacacacgtggat
ttccagtcccagcaggcacacattttgcagctgttacaacagggccaacttaaccaagcc
tttcaacaggccttgactgcatccgatctcaacctggtactttatgtctgtgaaactgtg
gattcgcacctggtcttcggtcagcatccttgtcccctaactcaaccggttttgctgtca
ctaattcaacagctctccactgatctcaactctcgcacagaattaaaactcagttatctg
gaagatgcagtcatgaatctggatcacacagaccctgttgctcgagatcacatgggttct
gtattaaatcaagtgagacagaaactctatcagttcaaccaggcagacccccataataat
gtgagcaaaagagctcgaagacttatgatgatgcttcagggactggtgacaccactgagt
taa
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