Leucoraja erinaceus (little skate): 129705409
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Entry
129705409 CDS
T09122
Symbol
dhx38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129705409 (dhx38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
leri03041
]
129705409 (dhx38)
Enzymes [BR:
leri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129705409 (dhx38)
Spliceosome [BR:
leri03041
]
Complex C
Other components
Step II factors
129705409 (dhx38)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_22
AAA_19
nSTAND3
Toxin_trans_Wo
T2SSE
nSTAND_NTPase5
Flavi_DEAD
SRP54
SLFN-g3_helicase
ResIII
AAA_7
AAA_30
AAA_16
Microtub_bd
Motif
Other DBs
NCBI-GeneID:
129705409
NCBI-ProteinID:
XP_055504934
LinkDB
All DBs
Position
17:complement(36947785..37038316)
Genome browser
AA seq
1249 aa
AA seq
DB search
MNDDDAIHRLEGYDPDNQIGGLIIKKKSATDDQHIFRAPAPKASLLGLDKLAAQKRKEKE
EKEEKEEKKKSKVSSYKDWEEGKEDFGPIEESDSKTAKAGKKERYYRSSGAETPSHTGGV
SEEFKERHRQRERDRREHGVYASSKDSDKEKKRDRSRDHDRESRRDRDDREWSRSSSSRA
KDRDRLERSERGYRDNSSDRSRNSRKDEPDTPRHRLKDALTPSRSSWEDDDSGNGTYYSH
RSQWESPSPTPSQRDLDKSERSYRSSGRDTERRDKERSRRNHYEEDTPLPTPSYKYNEWA
DDRKHLGATPRLSKGKGRREDGKDGIYFENEDEQRQWEEDQRQADRDWYMMDEGHDDFHN
PLAYTSEEYVKKREQLLQKQSQKRISAQKRQINEDNERWETNRMLTSGVVQRLEVDEDFE
EDNATRVHLLVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDMAIISRKGSQLVRRHREQK
ERKKAQHKHWELAGTKLGDIMGIKQVEEKDKDVEEDGKVDYRTDQKFADHMKDKNVASSE
FAKKKTILQQRQYLPIFAVREQLLNIIRDNNVVIVVGETGSGKTTQLTQYLSEDGYSNYG
MIGCTQPRRVAAMSVAKRVSEEMNVNLGEEVGYAIRFEDCTSEQTVIKYMTDGILLRESL
READLDHYSAVIMDEAHERSLNTDVLFGLLREVVARRADLKLIVTSATMDAGKFAIFFGN
VPVFYIPGRTFPVDIFFSKTPTEDYVEGGVKQALQIHLSTIPGDILIFMPGQEDIEVTCD
QIVERLEELENSPQLAVLPIYSQLPSDLQAKIFQKAPDGIRKCIVATNIAETSLTVDGIM
FVVDSGYCKLKVFNPRMGMDALQIYPISQANANQRAGRAGRTGPGQCFRLYTQSAYKNEM
LTATVPEIQRTNLANVVLLLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGS
LTPTGRMMVEFPLDPALSKMLIVSCDMSCSADVLIIVSMLSVPAIFYRPKGREEESDQMR
EKFAVPESDHLTYLNVYLQWKNNNYSTIWSNEHFIHAKAMRKVREVRSQLKDIMVQQRMN
IVSCGTDWDIIRKCICAAYFHQAAKLKGIGEYVNVRTGMPCHLHPTSSLFGMGYTPDYIV
YHELVMTSKEYMQCVTAVDGEWLAELGPMFYSVKQAGKTRQENRRRAKEELSSMEEEMAM
AQEQLRARKEEQEKKNILNSVRSVKIYTPGRREPGTPVTPRHTPARFGL
NT seq
3750 nt
NT seq
+upstream
nt +downstream
nt
atgaatgatgatgatgccattcacaggttggagggctatgaccctgacaatcagattggg
ggattgataataaaaaagaagagtgccacagatgatcagcacatctttcgagccccagca
ccaaaggcctcactactggggcttgataaattggctgctcagaagagaaaagaaaaagaa
gagaaggaagaaaaagaggaaaagaagaaatccaaggtgtcttcatacaaagactgggaa
gaaggaaaggaagactttggcccaattgaggagagcgatagtaaaactgccaaagctggg
aaaaaggagagatattatcggagttctggtgcagagacaccttcacacacaggtggtgtt
agcgaggagtttaaggaacgtcatcggcaaagagaacgagatcgccgagaacacggagtt
tatgcatcttcaaaggacagtgataaggaaaagaaaagagatcgaagcagagaccatgat
cgtgaatcaaggagggatagagatgatcgagagtggagcaggtccagctcttccagagcc
aaggacagagacaggttggagcgaagtgagagagggtacagagacaattcctcagatcga
agtagaaatagcagaaaagatgaacctgacacacccaggcacagattgaaagatgctctt
actccttctcgatctagctgggaggatgatgacagtgggaatggaacttattattcacat
cgatctcaatgggaatcaccatctcctactccctcgcaaagggatttggataagagtgaa
agaagttatcggagttcaggccgggatactgagagacgtgataaagaaagatctagaagg
aaccattatgaagaggatacacctttaccaacgccatcgtataaatacaatgaatgggct
gatgacagaaagcatctgggggcaacgccgcgactttccaaaggcaaaggtagaagggag
gatggtaaagatggcatttattttgagaatgaagatgagcaaagacaatgggaagaagat
caaaggcaagcagatagagattggtacatgatggacgaaggacatgatgactttcataat
cctctagcatacacttcagaagaatatgtgaagaaacgggaacaattattgcaaaaacag
tctcagaaaagaatttctgctcagaagagacagattaatgaggataatgagcgatgggaa
acaaatcgaatgttaaccagtggtgtggttcaacgtctggaagtggatgaagatttcgaa
gaggacaatgcaactagagttcatttattagtacataatttagtcccgccattcctggat
ggacgaattgtcttcaccaaacaacctgagccagtgattccagtaaaagatgccacatcc
gacatggcaatcatctctcgcaaaggaagccagctcgtgcgcaggcaccgtgagcagaaa
gagcgcaaaaaggctcagcataaacactgggaactggctgggactaaattgggagacatc
atgggcataaaacaggtagaagagaaagataaagatgtagaagaagatgggaaagtggat
tacagaactgatcaaaagtttgctgaccacatgaaagacaagaatgttgcaagcagtgaa
tttgcaaaaaagaaaactattcttcaacagagacagtatctaccaatatttgccgtcagg
gagcagttgctcaatataatacgggataacaacgtggtcattgttgtcggagaaactggt
agtggaaagactactcagctaacacagtatcttagtgaagatgggtattcaaactacggc
atgattggatgtactcagcccaggcgtgttgcagccatgtctgtggcaaaacgtgtcagt
gaggaaatgaatgtgaatcttggagaagaggtgggttatgctattcgatttgaagattgt
acttcagaacaaactgtcattaaatatatgacggatggtattctacttcgcgaatctctg
agagaagcagacttggatcattatagtgctgtcatcatggatgaagcccatgaacggtca
ctaaacacggatgtactatttggcttacttcgagaggttgtagctcgccgtgctgatcta
aaactgattgttacatcggcaaccatggatgcaggcaaatttgcaatattttttgggaat
gtgcctgtgttttatatccctggccggacatttccagttgatattttcttcagcaagacc
cccacagaagattatgttgaaggaggagttaaacaggctcttcaaattcacctgtcaact
attccaggtgatatattgatttttatgccaggccaagaagatattgaggtgacttgtgat
cagatagtggaacgcctggaagaactagaaaattctccacaactggcagtgttaccaata
tattcccagctgccctctgatcttcaggccaagatttttcaaaaggctccggatggaatc
cgcaaatgtattgtggctacaaatattgcagagacttcactcacagtggatggcatcatg
tttgttgttgattcgggatactgcaaattaaaagtctttaacccaagaatgggtatggat
gctcttcagatttatccaatcagccaggccaatgccaatcagcgcgctggtcgagctggg
agaaccggtccaggacagtgtttcaggttgtacacacaaagtgcttataaaaatgagatg
ctgaccgccactgttcctgaaattcagcgaacaaatttggcgaatgtggtgctgctgctt
aaatcacttggtgttcaagatttactccagtttcactttatggacccgccaccggaagat
aacatgttgaattctatgtaccaactctggatcctgggtgctcttgacaacacgggcagt
ctgactccaactggaaggatgatggttgaattcccacttgatcctgctctctcaaagatg
ttgatagtatcgtgtgatatgagctgtagtgctgatgtcctcatcattgtgtcaatgctt
tcagtgcctgccatcttttatcgaccaaagggccgagaagaagagagtgatcagatgagg
gagaagtttgctgtgcccgaaagtgaccatttgacataccttaatgtttacctgcagtgg
aagaataataattattctacaatctggtctaatgaacactttattcatgccaaagctatg
aggaaggttcgagaagttcgttctcagttaaaggatataatggtgcaacagcgtatgaac
attgtaagctgtggtactgactgggatatcatcaggaaatgtatctgtgcagcatacttt
catcaggctgcaaaactcaagggcataggagagtatgtgaatgtgagaacaggcatgcct
tgccacttgcacccaactagttcactttttggcatgggatacacaccagattacattgtg
taccacgaactcgtgatgacttcaaaggaatacatgcagtgcgtaactgcagtagatggg
gagtggctagctgaacttgggccaatgttttacagtgttaagcaagctggtaaaactcga
caggaaaatcgccggcgagccaaagaggaattgtcgtccatggaggaagaaatggccatg
gcgcaggaacagcttcgggcacggaaggaagaacaggaaaaaaagaatattttgaatagt
gtgaggtcggtcaagatctatacacctgggcggagggaaccaggaacaccagtgacacca
cgccatacgccagcacgctttggactgtga
DBGET
integrated database retrieval system
