Leucoraja erinaceus (little skate): 129705848
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Entry
129705848 CDS
T09122
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
leri
Leucoraja erinaceus (little skate)
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
leri03009
]
129705848 (ighmbp2)
03012 Translation factors [BR:
leri03012
]
129705848 (ighmbp2)
Enzymes [BR:
leri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
129705848 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
129705848 (ighmbp2)
Ribosome biogenesis [BR:
leri03009
]
Eukaryotic type
Other ribosome biogenesis factors
129705848 (ighmbp2)
Translation factors [BR:
leri03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
129705848 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
Viral_helicase1
zf-AN1
DEAD
ResIII
NAT10_TcmA_helicase
nSTAND3
UvrD-helicase
AAA_22
AAA_16
nSTAND_NTPase5
Flavi_DEAD
ABC_tran
IstB_IS21
PhoH
Zot
AAA_25
AAA
UvrD_C_2
DUF7205
ATPase
NPHP3_N
SRP54
AAA_31
NTPase_1
FtsK_SpoIIIE
AAA_33
AAA_6
Aminopep
nSTAND6
CbiA
SLFN-g3_helicase
RuvB_N
AAA_18
Motif
Other DBs
NCBI-GeneID:
129705848
NCBI-ProteinID:
XP_055505666
LinkDB
All DBs
Position
18:27496144..27540977
Genome browser
AA seq
1002 aa
AA seq
DB search
MEVFVSQNLELLQEERTAEIEETREWQENVSVKKLQQRGVCLVKLQVASQRTGLYGRLLV
SLEPRKYEASATLPSNNFGPGDIVGLYDNQGSTPLDQLASGVVTRITQKSITVAFDESSD
QLNFDGDSSYKLLKLANDVTYKRMKNALKALNQYHAGPASNLIDVLFGASEPGSPSASQN
SQELYNPRLDDSQKEAVTFALSQKEVAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP
SNVAVDNLVERLAQIEEKVLRLGHPARLLESIHRHSLDAVLAHGDNTQIVLEIRKDIDQA
FVKHKKKQDRGRKSTFIVKSLRKELRSREEAATSQILKKASVVLATNTGASDDGPLKLLP
NDYFDLVVIDECAQALEASCWIPLMKAPKCILAGDHKQLPPTIISRKAAAKGLSLSLMER
LIQKYGEQVVRMLTVQYRMHNAIMQWASKQMYGGRLVAHKMVATHLLMDLPGVDSTEETT
IPLLLIDTSGCGLLEIDEEDEQSKGNKGEVEIVTKHLQALIEAGVHPKDVAVIAPYNLQV
QLLRKELSNKYPELEIKSVDGFQGREKEAVVLSLVRSNRRGEVGFLAEDRRINVAVTRAR
RHLVVVCDARTVSTHPFLKSLVDYMTEHGEVRTAFEYCDDVVSENYVRPVLPAEQRRAKD
SLVQKNDKSPNRDKSTVAEKMHKDPAKHCSQKKDADRDSCIMHKENIGSETVEKSAKTTN
VKDNSEKLKEQILRFIEDSAMSKLEFPPSLNSHDRLLVHQLAEEHGLDHFSIGESKDRFI
VVAKSCFSEGQRQLKCQVEQKWLDVPLNIPQISMENEKGQILTEKGEPQEFTSCVSQSKL
DLKTLYIERIQREQARREEKAIQKQSFSTTASLKSKNKKHGKTKEESGVEEDFDALIAAS
IKANSICAFLKCNGSILTIGQHCIHCNKHYCLSHHIPEVHGCSAQAKAHARKVISREGVL
YAGSGTKDKSLDPVKKAHLQRKLGKKIDQLANQRSAKKESKK
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atggaggtctttgtgtctcaaaatttagagttactacaagaagaaaggacagctgaaatt
gaagaaaccagggaatggcaggaaaatgtctctgtgaaaaaactccagcaacgaggagta
tgtctggtgaagcttcaggtggcaagccagagaactggactgtatggacgcttacttgtc
agcttagaaccgagaaagtatgaagccagcgcaacattgcccagcaataactttggtcct
ggggacattgtgggtctatatgacaaccaaggctccactccattggaccaacttgcatcc
ggtgttgtcacacgcatcacccaaaaatcaattaccgtagcctttgatgaatccagtgat
cagctaaactttgatggtgattcttcctataaacttttgaaattggctaatgacgtcacc
tataagagaatgaaaaatgctttaaaagccttaaaccaatatcatgctggaccagcctct
aatctcatagatgtcttgtttggtgcttccgagccaggctctccatcagcaagtcaaaac
agccaggagttgtacaatcctcgtctagatgactctcaaaaagaagctgtaacttttgca
ctgtcgcagaaggaagtggcaattatccatggccctcctggcactgggaagacaaccaca
gttgtagaaataattctgcaagctgtgaaacaaggcttgaaggtactttgctgcgctccc
tctaatgttgctgttgacaaccttgtagagcgtctggcacaaattgaagagaaggtcctg
cgtttaggtcaccctgcacgactgcttgagtctatacatcgccactctctggatgcagtg
ttggcacatggagataacacccaaatagtattggagatcagaaaggacattgatcaggct
tttgtaaagcacaaaaaaaaacaggacagaggaagaaagtccactttcatagtcaagagt
ttgagaaaggagctgagatcgagggaagaggcagctacatcacagatattaaaaaaagcc
agtgtcgtcttggcaactaacacaggtgcttctgacgatggtccattaaaactcttgccg
aatgattattttgatcttgtggtgattgatgagtgtgcacaggcactagaagcaagctgc
tggataccgttaatgaaggctccaaaatgcatcctggctggagatcacaaacaacttcct
cctaccattatttctcgcaaggctgcagctaaaggcctatcactcagcttgatggagcga
ctaatccagaagtatggtgagcaggttgtgagaatgctgactgtgcagtatcgaatgcac
aatgctataatgcaatgggcttccaaacagatgtacggaggacgacttgttgctcacaag
atggtggcaacacatcttctaatggatctgcctggggttgattctacagaagagacgaca
attccactgcttctcattgatacctcaggatgtggtctgcttgaaattgatgaagaagat
gaacaatccaaaggaaataagggtgaggtcgaaattgtgacaaagcaccttcaagccctg
attgaggcgggtgtccatccaaaggatgttgctgtgatagcaccatacaatctgcaggta
caactcctgagaaaagaactgtcgaacaagtaccctgagctggaaattaagtctgtagat
ggatttcaaggaagagaaaaggaggctgttgttttatcccttgttagatccaatagaaga
ggtgaagtgggctttctggctgaagaccgaagaataaacgtggcagtaactcgcgcacgc
cgccacctggtggtggtgtgtgatgcccgcacggtcagcacccaccccttcttgaagtcc
ctggtggactacatgacggagcacggggaagtgcgcactgccttcgagtactgcgatgac
gtggtgtcagagaactacgtgcgaccggtccttccagctgagcaaaggagggcaaaagat
tctttggtgcaaaaaaatgacaagagcccaaatcgtgacaaaagcacggtggctgaaaaa
atgcataaagaccctgctaaacattgcagtcagaaaaaggatgcagatcgggatagttgc
ataatgcacaaagagaacatcggttcagaaacagtagagaaaagtgccaaaactacaaat
gtaaaagataactccgagaaactcaaggaacaaatattgcgatttatagaagatagcgca
atgagtaagcttgagttccctccatcgctgaactctcatgaccgtttgttagtccatcaa
ctagcagaagagcatggccttgatcattttagtatcggtgagagcaaggacaggtttata
gttgtggctaaatcgtgtttctcagaaggacaaagacagctcaagtgccaagtggagcaa
aagtggctggatgtgcctctgaatatccctcaaatatccatggaaaatgaaaaagggcag
atccttactgagaagggagaaccccaggagtttacctcttgtgtttctcagtctaagctg
gatttaaagactctgtatattgaaaggatacagcgggaacaagccaggagggaggagaaa
gcaatacagaagcaaagcttcagtaccactgcgtctctgaagtcaaaaaataaaaaacat
gggaaaaccaaagaagaaagtggtgtggaagaggattttgatgccctcattgcagcatct
ataaaagcaaatagtatttgtgcatttttaaagtgcaatggaagtattctcaccattggc
caacattgcatccactgtaacaagcactattgtctcagccatcacatcccagaggttcac
gggtgtagtgcgcaggccaaagctcatgcccggaaagtcatcagccgagaaggcgtcctc
tatgcaggcagcggcactaaagacaagtcattggatccagtgaagaaggctcacctccaa
agaaagctggggaagaagatcgatcagctggctaatcagcgaagtgccaaaaaggaaagt
aaaaaatga
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