Leucoraja erinaceus (little skate): 129706088
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Entry
129706088 CDS
T09122
Symbol
rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
leri
Leucoraja erinaceus (little skate)
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
leri03016
]
129706088 (rtcb)
Enzymes [BR:
leri01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
129706088 (rtcb)
Transfer RNA biogenesis [BR:
leri03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
129706088 (rtcb)
Prokaryotic type
tRNA splicing ligases
129706088 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
129706088
NCBI-ProteinID:
XP_055506035
LinkDB
All DBs
Position
19:complement(3054971..3073203)
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AA seq
505 aa
AA seq
DB search
MSRSYNDELAFIDKIGTNCWRIKHGFVPNMQVEGVFYVNETLKNLMFDELRNSCRGGGVG
GFLPAVKQIGNVAALPGIVHKSIGLPDVHSGYGFAIGNMAAFDMDDPQAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQAMFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPSKVSAKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAARKMGIDHKGQVCVMIHSGSRGFGHQVATDALVAMEKAMKRDNIIVNDRQLACARINS
QEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTAPDDLDMHVIYDVSHNIAKVEE
HVVDGKQKTLLIHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADKGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHEAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaacgacgagctcgccttcatcgacaagatcggcaccaactgctgg
cgcatcaagcatggcttcgtgcccaacatgcaggtggaaggggtgttttatgtcaatgag
accttgaaaaatttgatgtttgatgaacttcgaaactcgtgccgtgggggaggtgtgggt
ggcttcctgccagctgtgaagcagattggcaacgtggcagccttaccggggatagtccat
aaatccattgggcttcctgatgtccattcaggctatgggtttgcaattgggaacatggca
gcgttcgatatggatgacccacaggctgtcgtatccccaggtggcgtgggttttgacatc
aactgcggcgtgcggttgctgcgtaccaacctcgatgagggcgacgtgcagccggtcaag
gagcagctggcgcaggccatgtttgaccacattcccgtcggagttggatccaaaggggtc
atcccaatgggagccaaggacctggaggaggctttggagatgggagtggactggtccctg
cgggaaggctacgcctgggccgaggataaggagcactgtgaagagtacgggcggatgctg
caggcggatccgtccaaagtctccgccaaagccaaaaagcgaggattgcctcagctgggg
acgttgggggctggcaaccactacgctgagatccaagtggtggatgagatctacaatgac
tacgcggcccgcaagatgggcatcgaccacaagggccaggtctgtgtcatgattcacagc
ggcagcagaggcttcgggcaccaggtcgccacagacgcgctggtggccatggagaaggcg
atgaagagagacaacatcatcgtcaatgaccggcagctggcctgcgccaggatcaactct
caggaaggccaggactacctgaaaggcatggcggcagctgggaactacgcctgggtcaac
cgctcctccatgaccttcctcacacgccaggcgtttgccaaagtgttcaacactgcaccg
gacgacctggacatgcacgtgatctacgacgtgtctcacaacatagccaaggtggaggag
cacgtggtggatgggaagcagaagaccttgttgatccacaggaagggatctacacgagcc
tttccccctcatcaccctctcatccccgtcgattatcagttaactggacaacccgtcttg
attggtgggacaatgggtacgtgtagctatgtcctcacgggcacggaacaaggaatgacc
gagacgttcgggaccacctgccacggagcgggccgggccttgtctcgtgcaaagtcccga
cgtaacctcgacttccaggacgtgctggacaagcttgcagacaaggggatagcaattcgc
gtggcttcacctaaactagtcatggaagaagctcctgaatcctacaagaacgtaactgac
gttgtgaacacttgtcacgaagcaggaattagcaaaaaagctattaaactgcgaccaatt
gcagttataaaaggctga
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