Leucoraja erinaceus (little skate): 129706528
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Entry
129706528 CDS
T09122
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 1-like
KO
K05034
solute carrier family 6 (neurotransmitter transporter, GABA) member 1
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
129706528
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
leri02000
]
129706528
Transporters [BR:
leri02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
129706528
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Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
129706528
NCBI-ProteinID:
XP_055506867
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Position
19:complement(2578233..2605447)
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AA seq
562 aa
AA seq
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MEQGSQEISFLPGLMEPVPEGGVDTRAAKEEELQDRGSWKGRFDFLLSCVGYAIGLGNVW
RFPYLCGKNGGGAFLIPYFLTLIFAGIPLFLLETALGQYTSIGGLGVWKLAPMFKGVGMA
AVILSFWLNIYYIVIIAWALYYLFSSFTMDLPWQSCDNDWNTELCFSNFSLVDTTNLTSA
VTEFWERNMHQMSSGLEEPGTLRWPLAGTLALAWILVYFSIWKGVEWTGKVVYFSATYPY
VMLFILFFRGVTLPGAREGILFYLTPNFSKLASSQVWLDAATQIFFSYGLGLGSLIALGS
YNHFHNNIYRDCLIVCSVNSCTSIFAGIVIFSVIGFMSHITNKPISELASSGPGLAFLVY
PQAVTQLHPASLWAILFFSMLLMLGLDSQFCTVEGFVTALMDEYPRSLRRHKKKFIGSVC
FISYLAGLCMVTQGGLYIFKLFDYYSASGMTLLFLVFFETISISWFYGVNKFYKNIEEMI
GYKPCIWWKLCWVYFTPIIVLGVFLFSAVEMSPLTLGNYVYPKWGQGIGWFMALSSMVFI
PGYMVYLFFTTEGTLVQVRRKT
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atggaacaaggttcgcaggagatcagtttcctcccgggcttgatggagccagtgccggag
ggaggagtggacacacgggcggctaaagaggaggagctgcaggacaggggaagctggaag
gggaggtttgacttcctcctgtcctgcgtggggtacgccattggactgggcaacgtctgg
agattcccttatctctgtgggaagaacggtggaggtgccttcctgatcccgtattttctg
acgctgatatttgctggaatccccctgtttctgctggagacggctctgggccagtacact
tccatcgggggccttggtgtctggaagctcgctcccatgttcaaaggtgttggaatggct
gctgtcatcttgtcattttggctcaacatctactatatagtcatcatcgcctgggctctc
tactatctcttcagctccttcacaatggaccttccgtggcaaagctgtgacaatgactgg
aacacggagctttgtttctccaacttctcgctggtcgacaccaccaacctgaccagtgcc
gtgactgagttttgggagcgaaatatgcaccagatgagtagtggtctggaggagcccggc
accctacgttggcctttagctgggaccctggccctggcttggattctcgtttacttctcc
atctggaagggcgtggagtggacgggaaaggttgtgtacttctccgccacctacccctac
gtcatgctgttcattttgttcttccgcggagtcaccctccctggggcgagggaaggcatc
ttgttctacctcactcccaacttcagcaagctcgccagctcccaggtctggcttgatgcg
gcgacacagatattcttctcctacgggcttggtctgggatcactcatcgctctgggcagt
tacaatcatttccacaacaacatttacagagattgcctcattgtgtgcagcgtcaactcc
tgcaccagcatatttgctggtattgtcatcttctccgtcattggcttcatgtcccacatc
accaacaaacccatcagtgaactggcatcgtcaggacctggcctggcgtttcttgtgtac
ccccaggcagtgactcaactacatccagcatcactctgggccattctcttcttctccatg
ctactgatgcttggccttgactcgcagttctgtacggtggaaggctttgttaccgctctc
atggacgaatacccgcgaagtttgcgtcgacacaaaaagaagttcatcgggtcggtgtgc
ttcatctcgtaccttgccgggttgtgcatggtcactcagggtggtctgtatatcttcaag
ttgttcgattactactcagccagtggcatgactctcctcttcctggttttcttcgagacc
atctcaatatcttggttttatggagtcaacaagttttataaaaacattgaggagatgatt
gggtacaaaccgtgcatttggtggaagctttgttgggtatattttacacccattatagtt
ctgggagtgtttctcttcagcgccgtggagatgtcacctttgacccttggcaactatgtc
taccccaaatggggtcagggtattggctggtttatggccctctcctccatggtcttcatc
ccgggatacatggtctacttgttcttcaccaccgagggaactctggtgcaggtacggaga
aaaacatag
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