Leucoraja erinaceus (little skate): 129706713
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Entry
129706713 CDS
T09122
Symbol
nod1
Name
(RefSeq) nucleotide-binding oligomerization domain-containing protein 1 isoform X1
KO
K08727
nucleotide-binding oligomerization domain-containing protein 1
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri04621
NOD-like receptor signaling pathway
leri05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
129706713 (nod1)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
129706713 (nod1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
leri04054
]
129706713 (nod1)
Pattern recognition receptors [BR:
leri04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
129706713 (nod1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
CARD
NOD2_WH
AAA_22
AAA_16
NPHP3_N
AAA_30
nSTAND3
PIF1
NB-ARC
NTPase_1
AAA_19
HTH_MCM7
Motif
Other DBs
NCBI-GeneID:
129706713
NCBI-ProteinID:
XP_055507099
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All DBs
Position
2:complement(5547951..5631728)
Genome browser
AA seq
956 aa
AA seq
DB search
MVEAYDSSAQDANMDGECQLGSKQQMPCISAHSFTKVLKFHREVLVGRITNTECVLNNLL
KHKYISLEEAELSQQQPTQAAKVRQILDLVQSKGEETAEYFLHILYQANEIYPDLAPWLK
EIQYQPSEHIQAKSVIITDNVLQYIQKIRQDLRQDTRFVTSYVRKEDILLDDTYTDTVME
VINAVNEIKGTITDLEDLFSDAEIINEDAKTVFVTGDAGVGKTILLQRVQNLWSKGELRA
DIKFFFKFRCRMFNSFKEEDKISLRDLLFKYNCYPDKDADEIFSYIRQHPATVLFTLDGF
DELHVDDDLNDIPDISSPFEPTHPVALLLNLLRGKLLKGSMKLLTARTGTDLPLRMVRKR
VALKGFSKEHLRGYLKKCFKNKADQSLVVTQLEANPHLCSLCSVPLFCWIIVKCYEHFQS
TSSPQRLLDHITLTDIYLLMLEVFLNHSIKRGLNKQSNSQKETFKAKKCVLMRLGKLARR
GIENNNFIFSQEQMTEANISEEDLKLGFIKTACHYDGCGNQSTYEFLHLTLQSFFTAFVL
VVDEDISAREAIKFFAKCDRHMKVDSLLLRCVGYNMNHRKETFETNEHLQFTTLFLCGLL
SKAKRDLFKHLSSTGGVQRKRSALKTYLADRVKTHLKNLPSSPYQGFCRVQVLPQFIWLA
RYIFETQSEAVANLAARGICADYIKLTFCNAFSADCSAIANILRHRKTSIALEMDNNNIN
DYGVKELIPCFHNLTVVRLSVNQVTDDGVKVLAEELTKYKIIRFLGLYWNQITDVGAQDV
ARIVEECPSLHTLKIGLNKLTSEGGKLLAQAIKKNKGFRDIGMWGNQIGDVGAVAFADAL
RNHPSIQEISLAANGISTVGGKSLAEALKDNSSLEIFWLTENRLTDEAAFMFAEAVRVNK
KLLHLWLINNKITAVGANYLLEALNENTIIQEICLNGNAISAEEAKAFGNEKRLIL
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atggtagaagcgtatgattccagtgcccaggatgcaaatatggatggagaatgccaactt
gggtccaagcagcaaatgccatgcatttccgctcactcatttacaaaggtgttgaagttt
caccgtgaagtcttggtgggacgtatcacaaacacagagtgcgtgctgaacaacctgctg
aaacacaagtacatttcactcgaggaagccgagctgtcacagcagcagccaacacaagca
gccaaggttcgacaaatattggatctagttcagagcaagggagaagaaacggcagaatat
ttcttacacattttataccaagccaatgagatttacccagacctagccccatggctaaag
gaaatacagtatcagccgtcagaacacatacaggcaaaatcagtcattattacggacaat
gtcttgcagtacattcagaaaatcagacaggatctacggcaagacacaaggtttgtcacc
tcatatgtcaggaaggaagatatcttattggatgatacatacactgatactgttatggag
gtaatcaacgcagtcaatgaaattaaagggaccatcaccgacttggaggatctgttcagt
gacgctgaaatcattaatgaagatgccaaaaccgtgtttgtaacaggtgacgctggagtg
ggaaagaccattctcctccagagagttcagaacctgtggtcaaagggagagctccgtgcc
gatatcaagttcttcttcaagtttagatgcagaatgttcaacagcttcaaggaggaggat
aaaatctctctgcgagatcttctgttcaagtacaactgttaccctgataaagacgccgat
gagatattcagttacatccgacagcatccggccaccgttctcttcacactggacggattc
gatgaacttcacgtggatgacgaccttaacgatattcctgatatctcatcgcccttcgag
cccacacaccctgtggccctgttgttgaaccttctccgcggaaaactgttgaagggctcc
atgaaattgttgacagcgaggacaggcacagacttgcctttgaggatggtgagaaagaga
gtggcactgaagggcttttccaaggaacatttgcggggttatttgaagaaatgtttcaaa
aacaaggccgatcaaagtctagttgtgacccagctggaggccaaccctcacctgtgcagt
ctgtgttcagtgcctttgttttgttggattatagttaaatgctacgaacatttccagtcc
acaagcagcccccagcggctcttggatcacatcacgttaaccgacatttacctgttgatg
ttggaggtattcttgaatcattctatcaagcggggactaaacaagcaaagcaacagtcaa
aaggagactttcaaagcaaagaaatgtgtgctgatgcgtttggggaaattagcaaggaga
ggaattgaaaacaacaacttcatcttcagtcaggaacaaatgaccgaggccaacatctct
gaagaagatttgaaattgggtttcatcaaaactgcgtgccattacgacggatgtgggaac
cagtccacatacgagtttcttcatttaaccctacagtcatttttcaccgcttttgtcttg
gttgtagacgaggatatcagtgccagagaagccattaagttttttgccaaatgtgaccgt
cacatgaaagtcgattctcttttgttacgttgcgtagggtataatatgaatcacagaaag
gaaacatttgaaacaaatgagcacctgcagttcaccactcttttcctttgtggcctcttg
tccaaagctaaaagggacttgttcaaacatttgtcctccacgggcggtgtccaaaggaag
cgctcggcacttaagacctaccttgccgatcgcgtaaagacacacttaaaaaatctccct
tcatcgccgtaccaaggcttttgcagagtgcaagttttgccccagtttatatggctggcg
cgctacatttttgaaacgcagagcgaagcggtggccaatctcgcagcaagagggatttgc
gctgattatatcaaactcacgttctgcaacgccttctctgctgactgcagtgcgattgca
aacatcctgcgccatcgtaaaacgtcgattgctcttgaaatggacaacaataatatcaac
gactatggagtgaaagaactaattccttgcttccataatctcacagtggtcaggttgagt
gtaaaccaagtcacggacgatggagttaaagtgctggctgaagagctcacaaaatacaaa
attataagatttcttggcctgtattggaatcagatcactgatgttggtgcccaggatgtt
gcccgtatcgttgaagaatgtccaagtcttcatacactgaaaattgggctcaacaaacta
acaagtgaaggagggaaattattagcacaagcaattaagaaaaacaagggattcagagac
attggaatgtgggggaaccagattggagatgtgggtgctgttgcttttgctgatgcgtta
aggaatcacccttcaatacaggaaatcagtttggcagccaatggcatttccacagtgggt
ggcaaaagcttggcagaagcgctgaaagacaacagttctctggagatattttggctgaca
gaaaatcggttgaccgatgaagcagcgttcatgtttgccgaagcagtcagggtaaacaaa
aaactgcttcacttatggctgataaacaacaaaatcacagcggtaggagcaaactatctc
ctggaggcactcaatgaaaatacaataattcaagagatatgccttaacggcaatgccata
tctgctgaagaagccaaagcatttggaaatgaaaaacggttgatactgtga
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