Leucoraja erinaceus (little skate): 129706775
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Entry
129706775 CDS
T09122
Symbol
top3a
Name
(RefSeq) DNA topoisomerase 3-alpha isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri03440
Homologous recombination
leri03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
129706775 (top3a)
03460 Fanconi anemia pathway
129706775 (top3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
leri03032
]
129706775 (top3a)
03400 DNA repair and recombination proteins [BR:
leri03400
]
129706775 (top3a)
Enzymes [BR:
leri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
129706775 (top3a)
DNA replication proteins [BR:
leri03032
]
Eukaryotic type
DNA Topoisomerases
129706775 (top3a)
DNA repair and recombination proteins [BR:
leri03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
129706775 (top3a)
FA (Fanconi anemia) pathway
129706775 (top3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_GRF
Toprim
Zn_ribbon_Top1
Zn_ribbon_GRF_2
zf-C2H2_10
HypA
Motif
Other DBs
NCBI-GeneID:
129706775
NCBI-ProteinID:
XP_055507221
LinkDB
All DBs
Position
20:complement(11092703..11113561)
Genome browser
AA seq
962 aa
AA seq
DB search
MISVLSRTMSSVRGRRLQARQVLCVAEKNDAAKAIAEIMSAGRSRRREGFSKFNKIYEYE
CNMLGQNISIVMTSVSGHLLALEFKAPFQKWRSCNPVTLFDAEVEKYCPENYVDIKRTLE
REVRKCQALVIWTDCDREGENIGFEIIQVCKAVKPNLQVLRARFSEITPNSIRQAYENLV
EPDEKINDAVDVRQELDLRIGASFTRFQTLRLQKIFPNVLSNQLISYGSCQFPTLGFVVE
RFKAIQAFIQETFYKIKVTHENEDGNVEFNWKRHRLFNHTACLVLYQICMEDPVATVLDV
FTKPKSKWRPLPLETVELEKLASRKLKINAKETMRIAEKLYTQGYISYPRTETNIFPKDL
NLSMLVQQQTVDSHWGAFAQGILDGGGPNPRNGNKSDQAHPPIHPTKYASNLQGTEQRLY
EFIVRHFLACCSQDAQGQETTVEIDIAGECFVAHGLMIIARNYLDVYPYDKWNAKIIPVF
ERGKKFQPTTIEMVDGETSPPQLLTEADLIALMEKHGIGTDATHADHIETIKSRMYVGLT
PEQRFLPGELGMGLVEGYDSMGYEMSKPDLRAELEANLKLICEGKKEKFSVLHQYIQKYK
QVFIAAVAKAKKLDEALSHYLGEMTEITPSEEFQMEISEPVRKCPQCGRDMVLKPKKDGG
TYLSCTGYPSCRSAVWFPDSVLGVSKDESVCPTCKPHPVHRLKFKFKRGSVPPLVPLEFV
GCIGGCDEMLREILDLRYLRGPSHLNDQTANHLSQNRPENHVNKRPRNRGGAVPTVAVGP
VSRTIPSVTARDDNAVMCNCGQNALLLTVRKDGPNQGRKFYKCNVGNCNFFLWAEQDGGE
SRSHGGAVGRGNTNTDTGNIRLAESRGTSGVGETMCTCNQPAVTRTVQKDGPNKGRAFHT
CSKPREQQCGFFQWADENALPGSITNRLDRNSFQNGPTAKKPRSCGLCHQPGHTRTKCPQ
NR
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atgatatcggtgctcagccgcacgatgagcagcgttaggggtcgccggttgcaggcccgc
caggttctgtgtgtggctgagaaaaatgacgcggccaaagccatcgcagagatcatgtcg
gctggacgttcccggaggagagaagggttttcaaaattcaacaagatctatgagtatgaa
tgtaatatgcttggtcagaatatttctattgtgatgacttctgtttcgggtcacttactt
gcgttagaattcaaagcaccttttcagaaatggcgtagctgtaatcctgtgactctcttt
gacgctgaggttgagaagtattgtccagaaaactatgtggatattaagagaaccctagag
cgagaagtgaggaaatgtcaggccctggtgatttggaccgattgtgatcgtgaaggggaa
aacattggatttgaaataattcaagtgtgtaaagcagtgaagcccaacctgcaggtgctg
cgtgcacgattttctgagattacaccaaattccatcagacaagcctacgagaatcttgtg
gaacctgacgagaaaatcaatgatgctgttgatgtaaggcaggagttggatcttaggata
ggtgcttctttcacccggtttcaaaccttgcgactacagaaaatatttccaaatgtgcta
tcaaatcagctcatcagctacggcagctgccagtttccaacgctggggtttgtggttgaa
cgtttcaaagcaatccaggcttttattcaagaaacattctataaaatcaaagttacccac
gagaatgaagatggcaatgtagaatttaattggaaaagacatcggcttttcaaccacacg
gcatgccttgtactttaccagatttgcatggaggatccagttgctactgtacttgatgta
tttactaaaccgaagagcaaatggagacctttacctcttgaaactgtggaattggagaaa
ctggcttcaaggaagttaaaaatcaatgcaaaggagacaatgaggatagcagagaagttg
tacacccaaggatacatcagctaccctcgtacagaaaccaatatcttccccaaggacctg
aacctctccatgttggtgcaacagcaaaccgtggactctcattggggggcatttgcacaa
ggtattttggacggaggtgggccaaaccctcgaaatggaaacaaatctgaccaggcccat
ccaccgatccatccgactaaatatgccagcaacttacagggaactgagcagcgtctttat
gagtttattgttcgccactttctggcttgttgctctcaggatgcacagggacaggaaacc
acagtggaaattgacattgcaggagaatgttttgttgctcatggacttatgattattgca
cggaattatctcgatgtttatccatatgacaaatggaatgctaagattataccagtgttt
gagagggggaagaaattccagccgaccactattgagatggttgatggcgagacaagtcca
ccccaactcttgactgaagctgatctaattgccctgatggagaagcatggtatagggact
gatgccactcatgcagaccacattgagacgatcaaatcccgaatgtatgtgggcttgact
ccagagcagcgattcctccctggggaattgggaatgggtctagtggaaggttatgattcc
atgggatatgagatgtccaagccagatctaagagctgagcttgaggcaaatttgaaactg
atttgcgaagggaagaaagaaaagtttagtgtgctgcatcagtatattcagaaatacaag
caggtattcatcgcagccgtggcaaaagcaaaaaagctggatgaggctctctcccattac
ttgggggagatgacagaaattacaccatccgaagagttccagatggagatttcggaacct
gttcgaaaatgcccccagtgcggcagggacatggttctcaaaccaaagaaagatggaggg
acgtacctttcatgtaccggatatccgagctgcaggtctgcagtctggtttcccgattct
gtccttggggtcagcaaggatgagagcgtttgtcccacatgtaagccacacccagtgcac
aggttaaagtttaagttcaagcgaggcagcgtgcccccgttggtccccttggagttcgtc
ggctgtattggaggttgtgacgagatgttgagggagatcctggacctgaggtatttacgt
ggaccatcccatttgaacgatcaaacagccaaccatttgtcgcagaacagaccagagaat
cacgtgaacaagaggcccagaaaccgtggaggtgctgtgccaacggtggctgtgggccca
gtatctagaaccattccatcggtgactgcacgtgatgataatgctgttatgtgcaactgt
ggtcagaacgcactcctactgacagtccgcaaggatggaccaaaccagggacggaagttt
tacaagtgcaacgtgggcaattgcaacttttttctgtgggccgagcaggacggtggggaa
tcgagaagccatggaggagctgttggcaggggcaatacgaacacagatacaggaaacatc
cgcctagctgaaagcagggggacctctggtgtaggagaaacaatgtgcacatgcaaccag
ccagctgtcacacgcacagtgcagaaagatggacccaacaagggacgggcattccatacc
tgctccaaacccagagaacagcagtgtggcttctttcagtgggccgatgagaacgcttta
cctggatcaataactaatcgtctggatagaaattctttccagaatggacccacagcaaag
aagccacggtcctgcgggctctgtcatcagccagggcacaccaggacaaagtgcccccaa
aaccggtga
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