Leucoraja erinaceus (little skate): 129706816
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Entry
129706816 CDS
T09122
Symbol
shmt1
Name
(RefSeq) serine hydroxymethyltransferase, cytosolic
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri00260
Glycine, serine and threonine metabolism
leri00630
Glyoxylate and dicarboxylate metabolism
leri00670
One carbon pool by folate
leri01100
Metabolic pathways
leri01200
Carbon metabolism
leri01230
Biosynthesis of amino acids
leri01240
Biosynthesis of cofactors
leri04981
Folate transport and metabolism
Module
leri_M00141
C1-unit interconversion, eukaryotes
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
129706816 (shmt1)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
129706816 (shmt1)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
129706816 (shmt1)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
129706816 (shmt1)
Enzymes [BR:
leri01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
129706816 (shmt1)
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GFIT
Motif
Pfam:
SHMT
Motif
Other DBs
NCBI-GeneID:
129706816
NCBI-ProteinID:
XP_055507303
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Position
20:complement(14925982..14946877)
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AA seq
482 aa
AA seq
DB search
MADIAVDECVDIWESHNAQMVEPLCTNDPEVYEIIKKEKSRQRLGLELIASENFASRAVL
EALGSCLNNKYSEGYPGQRYYGGTEFVDEMERLCQKRALDLYSLDPEKWGVNVQPYSGSP
ANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTEKKKISATSIFFESMPYKVNPETGYID
YDRLAENACLFHPKLIIAGVSCYSRNLDYARMRQIADENSAYLMADMAHISGLVAAGVVP
SPFEYSDVVSTTTHKTLRGCRSGMIFYRKGIRRVDPKTGKEVMYNLEGPINQAVFPGLQG
GPHNHAIAGVAVALKQAMTVEFKVYQKQVVSNCKALSTAMMDLGYKVVTDGSDNHLILVD
LRKQGTDGGRAEKVLELCAIACNKNTCPGDKSALRPSGLRLGTPALTSRDLRENDFKKVA
AFIHRGIEITLEIQRDIGAKAPLKEFKEKMLTDKNYQNKITQLREAVETFASKFPIPGLP
DL
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggcagacattgcggttgatgagtgtgtggatatctgggaatcccacaatgcacagatg
gtggaacctctttgcaccaacgacccagaggtgtacgagattattaagaaggagaagagt
cgccagaggctggggttggaactcatcgcctcggaaaactttgcgagccgagcagtgctg
gaggctctgggctcttgcttgaataacaaatattcagaaggttaccctggccagagatat
tatggcggcacagagtttgtggatgagatggagcgactgtgccagaaacgagcattggat
ctgtattccctcgatccagagaaatggggggttaatgtccagccatattcaggctcacca
gcaaactttgccgtgtacacagctctggtagagccacatgggaggatcatgggattggac
cttcctgatggtggacatctgacacatggcttcatgacagagaagaagaaaatctctgcc
acctccatctttttcgagtccatgccatacaaggtaaaccctgagaccggctacattgac
tatgaccgactagcagaaaacgcctgtctcttccacccgaaactcatcattgcaggtgtt
agttgctattcccggaatctggattatgccaggatgcggcagattgcggatgagaacagt
gcctacctgatggcggacatggcacacatcagcggcctggtggcagccggggtagttccg
tcccccttcgagtacagtgatgtggtctccaccacaacacacaagacactccgtggctgc
aggtctggcatgatcttctatcgaaaaggaatccgcagagtcgacccaaagacaggcaag
gaggttatgtacaacttggaaggtcccatcaaccaggcagtcttcccggggctgcaaggt
ggaccacacaaccatgccatcgcaggggttgctgtggcactcaaacaggcaatgactgtg
gagttcaaggtctaccagaagcaggttgtgtctaactgcaaggctctttcgacagcgatg
atggacctgggatacaaggttgttaccgacggttctgataatcacctaatcctggtcgat
ttacgtaaacaaggaactgatggaggcagagctgagaaggttctggaactgtgcgccatt
gcttgcaacaagaacacttgtccaggtgacaagagtgccttgcgtcccagcggcttgcgg
ctggggacaccggccctcacctcccgggacctgcgggagaacgacttcaagaaagtggct
gctttcattcacagagggattgagataacattggagatccagagggacatcggggcaaaa
gctcccctcaaagaattcaaggagaaaatgctgaccgacaagaactatcaaaacaagatc
actcagttgagggaggctgtggagacatttgcatccaagttcccaattcctggattgcca
gatctctaa
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