Leucoraja erinaceus (little skate): 129706863
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Entry
129706863 CDS
T09122
Name
(RefSeq) E3 ubiquitin-protein ligase RBBP6-like isoform X1
KO
K10624
E3 ubiquitin-protein ligase RBBP6 [EC:
2.3.2.27
]
Organism
leri
Leucoraja erinaceus (little skate)
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
leri04121
]
129706863
Enzymes [BR:
leri01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
129706863
Ubiquitin system [BR:
leri04121
]
Ubiquitin ligases (E3)
U-box type E3
129706863
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DWNN
zf-CCHC_2
U-box
zf-C3HC4_2
zf-C3HC4_3
zf-CCHC
zf-RING_UBOX
zf-RING_5
zf-RING_2
zf-C3HC4
zf-C3HC4_4
DUF3006
Motif
Other DBs
NCBI-GeneID:
129706863
NCBI-ProteinID:
XP_055507419
LinkDB
All DBs
Position
20:18241318..18311737
Genome browser
AA seq
1830 aa
AA seq
DB search
MSCIHYKFSSKLNYDTVTFDGLHISLSDLKKTIMAREKLKAADCDLQITNAQTKEEYTDD
NALIPKNSSVIIKRIPIGGVKSAGKSFVIDRSEPASGTSKAFYPFAHGSNRGRQEKEVSD
LVARLQGKLNEIDDSGTSISLAQLTKTANLAEANASEEDKIKAMMTQSGQEYDPVNYMKK
PLGPPPPTYTCFRCGKPGHYIKNCPTNGDKNFEAVPRIKKSTGIPRSFMVEVDDPNMRGA
MLTNTGKYAIPTIDAEAYAQGKKEKPPFLPEEPSSSSEEEDPIPDELLCLICKDLMTDAV
VIPCCGNSYCDECIRTSLLESEEHTCPTCHQTDVSPDALIANKFLRQAVNNFKNETGYTK
RSRKQQLTQQLTQQQPRLPSLPIQNQLPSLRPLHSINPQTVLPSTRTAISKSADLPLTSA
SATGQVSVAISLPSAASAPVRAASPAKGNRDSSAASIPAPDVSTVAVQLHHLPSKHEEGD
ILEIGKSTVTVTSGITTANPSMPTSSTSALKGYQVPVLGHPASHGQSIPTTGQPMRTSGV
RPPGNRSGWELPSNRGHHSDRIPRSRTQGITNPPPVYVPPPTLYPPPPHPVPLPPGVPPP
QFPPQFPPGQPPPTGFSVPPPGFPPAQATISAPWVPPATPAAPANVIPTVTQVPPLSREE
FYREQRRLKEEEKKKSKLDEFTNDFAKELMEYRKIQKERRRSYSRSRSRSYSGSSFSGSS
YSYSKSRSHSSRSYSRSVSRSPSRSYSRSPSYRRGGGKSRGYRSRSRSRGFHRSRSRSPS
YRGYRSRSRSPNYKPHSPYKRSIPQGENEREFYDRYREPPPPFDYRELYDRPRDPRDSYE
RERYREWERRCRAWYEYYKGYNGGNQPRPRSPTNKDHLSPERFVPPGTRRDISPHGRGRR
DEYPTEQLPRGRNVGGACNYPEKYPYRETHGVKELRGSKEKEVTNLRSDSKGTKHKKHRK
KKKDETDPVSNPESCRDAKKAVETVGDDSKGAALFLPPSRDDATPVRDEPMEGESVAYKS
MSDKDRKEKSKSNKMEKVKRKAESSMPKKESSGKSAKAAQEKPPEKERDKSPHSELSIKK
NREECPAKVECVKVQPLPKSEKFFLPRKLQLKLGREYKETKPAKEEKQRKDYPREETKHE
KHDKTVNRDEKLKRTVKADEKPRQPEAKADKRKRKSDEKVADRELGTPPTKSSKVEISEA
AKPSAKPKTTSGTEKAARDFVESSFENETVTPANLPVRKIKINRESGKKIVSGESPAAPE
EAPELSEVNGGKSKSDKVKTKARRKVAGNEMTGSVLVDYTSTSSAGGSPMRRAEEKLDAK
KTVIKTMEEYNSDTRPPAEDEIVIVQVPRSKWEKEDYETDEDEGRAAAAAAAAAAAALNL
VKLANSGQGVKPTNPTKQTDKDAVPAEKPQKNIKDLNVEEPQQDAVTPGKSVILNEKVAK
IKDKEHSTMDREVLDKKKAAIQLDKPAVAERDIEAANGKHLTSAAKERQVEKLEPNNRGA
SNKDLVPNVDSKTDGINRHIPLTKQREERGRDTRRRDSPSKGEELTHGQKGRDQQTESRR
GSTEPRKIDHHPEKDRKPQTTPRSGSESRSGTEEVKSVSSSRGKEKPAFETRSSKDRQVS
GNKLAHQTEISTEKNEQELCVGRGDRDHGRPRMPGSLCRSNRLSRHSLDLARETDEAAFE
PDYSESDSEIEAEHTVKDGKDTKQITNELTEVKGVPVGSRSSAPKIRTQSSPSCSHSPSE
SQTRSHSSSASSEDTQDSKKKKRKKEKKKHKKHKKHKKHKKHLGVVLELDKTQKHKHKKK
KSKKGKDKEKDKDSDQKVRSSVIVRTTETD
NT seq
5493 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtgtatacattacaaattttcttctaaactgaactatgacacggtcactttcgat
gggcttcatatttctttgagcgatctaaagaagactatcatggcccgggagaagctgaag
gcagcagactgcgatttacaaatcaccaatgcacagactaaggaagaatatacagatgat
aatgctttaatacccaagaattcatctgtcattataaaaagaattcccatcggaggtgtg
aaatctgctggcaaatcatttgtcatagatcgttctgaaccagcaagtgggacatcgaaa
gcattttatccttttgctcacggaagcaacaggggaaggcaagagaaagaggtgtcagac
ctagttgccagactgcagggaaagctgaatgagattgatgactctggaacctctatctca
ctggcccagcttacaaagacggccaatctggctgaagctaatgcctccgaagaagataaa
attaaggccatgatgactcagtctggtcaagaatatgatccagtgaactatatgaagaaa
cctttgggtcctcctccaccaacatatacttgttttcgttgtggaaaaccaggccattac
attaaaaattgcccaactaatggggacaaaaattttgaagctgtgccaaggattaagaag
agcacgggcattccccgcagtttcatggtagaagttgatgacccaaatatgaggggtgca
atgctcaccaacactgggaaatatgccatacctacaattgatgcagaggcatatgcacaa
ggcaagaaggaaaaaccaccattcttgccagaggagccttcatcatcatcggaagaagaa
gatccaattcccgatgaactgttgtgccttatctgcaaagatctcatgacggatgctgtt
gtcataccatgctgtggaaacagttattgtgatgaatgtattagaacatcactactggaa
tctgaggaacatacttgccctacctgccaccaaacagatgtttctccagatgctctaatt
gcaaataaattcttaagacaggctgttaacaacttcaaaaatgaaaccggctacacaaaa
agatctcgtaaacagcagctgacccagcagctgacccagcagcagccacggctaccttct
cttccaattcaaaatcagctgcccagtctgaggccattgcattccatcaaccctcagact
gttttgccctcaactagaacagccatctcaaagtcggcagatctcccactgactagtgct
tctgcaactgggcaggtttctgttgctatctcccttccgagtgcagcttccgccccagta
cgtgctgcttctcctgcaaaaggaaaccgagattcctctgctgccagtatccctgctcca
gacgtatcaacagtagctgttcagcttcatcatttaccttcaaaacatgaggaaggagat
attctggaaattggcaaatccactgtgaccgttacctctggaataaccactgccaaccca
tccatgcctacaagcagcacctcggcacttaagggttatcaggttcctgttcttggtcat
cctgcttcacatggacaatccatacctacaacaggtcagccaatgaggacaagtggtgtt
cgaccaccaggaaacagatcaggctgggaactaccatccaacagagggcatcatagtgat
cggattccaagaagtcgaacacagggaattacaaaccctccccctgtctatgtgcctccc
ccaactctctaccctcctccacctcacccagttcctcttccaccaggggtgcctccccct
caatttcctccacagtttcccccaggccaacccccacctacaggatttagtgtccctccc
ccaggattccctccagcacaagccacaatatctgccccctgggtaccgcctgctactcca
gcagctcctgccaatgtcataccaaccgtaacgcaagtgcctccactgtccagggaagaa
ttctaccgggagcagcgacggctaaaagaagaagagaagaaaaagtcaaagcttgatgag
ttcaccaatgattttgctaaagagctaatggagtacagaaaaatccaaaaggagcgcaga
cgttcctactccaggtcccggtcacgttcatacagtggatcatcattcagtggcagctcc
tactcgtattccaagtcaagatctcattcctcgcgatcttattcaagatcagtcagtcga
tccccaagtcgttcctactcaagatcaccttcatatcgaagaggcggtggaaagagtagg
ggttatcgatcaagatccagatctcgtgggtttcataggtccagatctaggtcgccatct
tacagaggatatcggtctcgttcccgatctccaaattacaagccccattctccttacaaa
aggagtattccacagggtgaaaatgagcgtgagttttatgatcgttacagagaaccacca
ccaccgtttgattacagagaactatatgatagacctcgtgatccaagagattcttacgaa
agagagcgctacagagaatgggagaggcgatgccgagcatggtatgaatattataaaggt
tacaatggtggtaatcaaccacgacctcgttctcccacaaataaggaccatttgtctcct
gagcgctttgtcccacctggtaccaggcgtgacatttcacctcatggtcggggccgcagg
gacgaatatccaacagagcagttacctcggggccgtaatgtaggtggtgcctgcaattat
ccagaaaagtacccttacagagagactcatggtgtaaaggaactgagagggtcaaaggaa
aaagaagtaacaaaccttcgttctgactcgaaaggtacaaagcacaaaaaacacaggaag
aagaaaaaggatgaaaccgatccagtcagtaatccggagtcttgtcgagatgcaaagaag
gctgtggaaacggtaggtgacgatagcaaaggagctgccttgtttctgccacccagcaga
gacgatgccacaccagtgagggatgagcctatggaaggggaatcagttgcttataaatcc
atgtctgacaaagacaggaaagaaaaatctaaatctaataaaatggaaaaagtgaagcgg
aaagcagagagcagcatgcccaagaaagagtcgtctggtaaaagtgccaaagcagcgcaa
gagaagccgccagagaaagagcgggataagtcacctcatagtgagctcagcattaaaaaa
aacagggaggaatgtcctgccaaggtcgagtgtgtgaaagtacagccactacccaaaagt
gagaagttttttctgcccaggaagctgcagctcaaactgggcagagagtacaaagaaaca
aaaccagcaaaggaggaaaagcaaagaaaggattatcccagggaggagacaaaacatgag
aagcacgataaaacagtcaacagggatgaaaaactgaaacggacagtcaaagcagatgag
aagccaaggcagccagaggcaaaggctgacaagcgtaagaggaaaagtgatgaaaaagtg
gcagacagagagcttggaacacctccaactaaatcatcaaaagtagaaatatccgaggct
gcaaaaccttcagcgaaaccaaagaccacgtctggtactgagaaagcagccagagatttt
gtagaatcatcttttgaaaatgagacggtcactccagcaaatcttccagtgaggaagatc
aaaataaatagggagagtggaaagaagattgtaagtggagaatctccagctgctccggag
gaggcacctgagttatcagaggtcaatggcggaaaatccaaatcggacaaagtgaaaacc
aaggcgaggaggaaagtggcggggaatgagatgactggttcagtcctggtagattataca
agcaccagttctgcaggagggagccccatgagaagagctgaagagaagttggatgcaaag
aagacagtgattaagactatggaggagtacaacagtgataccagacccccagctgaagat
gaaattgtcattgtccaagtccctcgatccaagtgggagaaggaggactatgagacagat
gaagatgaaggaagggcggcggcagcagcagcagcggcagcagcagcagcactaaacctt
gtaaaacttgccaattctgggcaaggtgtgaagcctacaaacccaacaaagcaaactgat
aaagatgctgttcctgctgagaaacctcaaaaaaacattaaggatctaaatgtggaggag
cctcagcaggatgctgttacacctggaaaaagtgtgatactgaatgagaaagttgcaaag
atcaaagataaggagcatagtacgatggacagagaggttttggacaagaagaaagcagct
attcagcttgacaagccagcggttgcagagcgggatattgaggcagcaaatggaaagcat
cttacttcagctgcaaaagagcggcaggttgaaaaattagagccaaataaccgtggtgcc
tcaaacaaagatttggttcctaacgttgacagtaagacagacggcatcaacaggcacatc
ccactcaccaagcagagggaggagcggggccgcgatacaaggaggcgagattcccccagt
aagggtgaagagctgacacatggacaaaagggaagagatcaacagacagaaagcagaaga
ggcagtaccgaacccaggaaaatcgatcaccatcctgagaaagacaggaaaccacaaacg
accccaagaagtggatcggaatcgaggtctggtactgaagaagtaaaatcggtctcctcc
agcagaggcaaggaaaaacctgcctttgaaacacggagcagcaaggacaggcaagtaagt
gggaataagttggcccatcaaactgaaatatcaactgaaaagaatgagcaggagctttgt
gtcgggcggggtgacagggatcatggtcgcccccggatgccaggttctctctgccgttcg
aaccgactctcccggcactccttggatctggccagggaaacagacgaggctgcctttgaa
ccggattacagtgaaagtgacagtgaaattgaagcagagcatacagtaaaggatggaaag
gatacaaaacagatcacaaatgaactgacagaggtcaaaggtgtgcctgtgggctccagg
agtagtgcccctaaaattcgcacccaaagcagcccaagttgcagccacagcccaagtgag
agtcagacacgcagtcacagcagcagtgccagctcagaggacacacaggatagcaagaag
aaaaagcgaaaaaaggagaaaaagaagcacaaaaagcacaagaaacacaaaaagcacaag
aagcatctcggtgttgtactagagctggacaaaactcaaaaacacaaacacaaaaagaaa
aagtccaaaaaaggcaaagacaaagagaaggacaaagacagtgaccaaaaggtccgatca
tctgtcattgtccgaacaacagaaacggattag
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integrated database retrieval system
