Leucoraja erinaceus (little skate): 129706987
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Entry
129706987 CDS
T09122
Symbol
parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129706987 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
leri03019
]
129706987 (parn)
Enzymes [BR:
leri01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
129706987 (parn)
Messenger RNA biogenesis [BR:
leri03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
129706987 (parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
RRM_1
DUF7722
LUD_dom
Motif
Other DBs
NCBI-GeneID:
129706987
NCBI-ProteinID:
XP_055507666
LinkDB
All DBs
Position
20:25315244..25434966
Genome browser
AA seq
683 aa
AA seq
DB search
MEITRQNFKEHLSLIYEAIEEADFLAIDGEFSGISDGPSVSTLTNGLDTPEERYQKLKKH
SMDFLLFQFGLCTFTYDSAENRHIMKTFNFYVFPKPLSRNSPDVKFVCQSSSIDFLANQG
FDFNKVFRDGIPYLNRDEERQLREQLEEKHQQSNGTGTPSFISPNSAKGPVVIPEEHRSF
IEKIVEKVEDLLKNDKGSLELDPCTGFQRKLIYQTLNWKFPKGTHVETLENEKKERYIVV
SKLDDDERRRREEQKRAKEQEEMNDAVGFSKVIYAISKSGKLVVGHNMLLDVMHTIHQFF
CPLPDELNEFKEVTTSVFPRLLDTKLMASTHPFKELIMNTPLAELEKRLKDAPFRPPQVE
SAEGFPSYNTATEQLHEAGYDAYITGLCFISMSNHLGSFLSPPKVFVPAKSKLVEPFINK
LFLMRVIDIPYLNLSGPDLQPKRDHVLHVRFPKEWKTSDLYQLFSAFGNIQVSWIDDTSA
FVALSQREQVQIAVNTSRYAESYRIQTYAEYVEKKQEDKHTKRKWTEESWREVERKRLKT
QYAPQPYLSQMFDFNSHSQLKQKVLETFQVKDASLELGANPMASKRSMSPIEEETVSEEM
EANAIANKDAEIDNSGSAWIDSSITEARKVKKPWQKKEEQQEKTGKGSPDMANLTRAMAV
FLRLSLAAVSLLLTSVAVGVYFS
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggagatcaccagacagaattttaaagagcatctaagtctaatctatgaagcaattgag
gaagcagattttctggcaattgatggagaattttcaggaataagtgatggaccttcagtg
agcactctaacaaatggcttggacacaccagaagaaagatatcaaaagctgaaaaagcat
tccatggacttcctgctgtttcagtttggactttgcacatttacatatgactctgcagag
aataggcacataatgaaaacatttaacttctacgtatttccaaagccgctgtctagaaat
tcacctgatgttaagtttgtttgccagagttcgagtattgattttctagcaaatcaagga
tttgacttcaataaagtcttccgagatgggatcccatacctaaaccgtgacgaggaaaga
cagcttcgggagcagttagaagaaaagcaccaacagtctaacggcacaggaacgccatct
ttcatctcgccaaactctgccaaagggccagttgtcatacctgaagaacatcgaagtttt
atcgagaaaattgtggaaaaagttgaagacttgctgaaaaatgacaaaggtagtttagag
ttggatccatgtaccgggttccagagaaagctcatttatcagactttgaactggaagttt
cctaaaggaactcatgttgaaaccttggagaatgaaaagaaagagagatacattgtggtc
agtaagctggatgatgatgaaagaaggaggagagaagaacaaaagcgagcaaaagaacag
gaagaaatgaatgatgctgtgggattttccaaagtaatatatgccatttctaaatcgggt
aaactggttgtggggcacaacatgttactggatgtcatgcatacaattcaccagttcttc
tgcccgctaccggatgaattgaatgaatttaaagaagtaacaacaagtgtatttcccagg
cttctcgatacaaaacttatggcaagcacacatccttttaaggaactgataatgaataca
cctcttgcagagttggaaaagcggttaaaagatgcacccttcagacctccccaagttgaa
agtgcagaaggatttccaagctataacacagcaaccgaacaactccatgaagcaggttac
gatgcatatataactggcctgtgtttcatctccatgtctaatcatttaggttcatttctc
agccctcctaaagtttttgttcctgcaaaatctaaattggttgaaccttttattaacaaa
ctgtttctaatgagagtgatcgacattccctacctaaacctcagtggaccagatttgcaa
cctaagagggaccatgttctacatgttcgttttcccaaggagtggaagaccagtgatctc
taccaacttttcagtgcctttggtaacatccaggtgtcttggatagacgatacttcagca
tttgtagctttgagccaacgggagcaggtacagatcgctgtaaacaccagcaggtatgca
gagagctaccggatccagacatatgcagagtatgttgagaagaagcaagaggacaagcac
accaagcggaagtggacagaggagagctggcgggaagtggaaaggaagagactaaaaacc
cagtacgctcctcagccatatcttagccagatgtttgatttcaacagtcattcgcaactg
aaacaaaaagtgctggaaacgttccaagtgaaagacgcttcattagaactgggagcaaat
ccaatggcgagcaaacgaagtatgagccccattgaggaagagacggtgtctgaggagatg
gaggcgaatgcaatcgcaaataaagatgccgagattgataattcaggtagtgcctggata
gattcttcaataactgaagccagaaaagtcaagaaaccatggcagaaaaaggaagaacag
caagaaaagactggtaagggatctcctgacatggccaatttgacgagagccatggcagtc
tttttaagactgtcacttgcggcagtgtctctccttttgacaagtgtggctgttggcgta
tacttcagttaa
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