Leucoraja erinaceus (little skate): 129707026
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Entry
129707026 CDS
T09122
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
leri
Leucoraja erinaceus (little skate)
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
leri01001
]
129707026 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
leri04054
]
129707026 (ciita)
Enzymes [BR:
leri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
129707026 (ciita)
Protein kinases [BR:
leri01001
]
Serine/threonine kinases: Other
TAF1 family
129707026 (ciita)
Pattern recognition receptors [BR:
leri04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
129707026 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
NB-ARC
LRR_4
LRR_14
nSTAND_NTPase5
AAA_16
NPHP3_N
LRR_9
nSTAND3
nSTAND6
AAA_PrkA
CARD
AAA_22
Motif
Other DBs
NCBI-GeneID:
129707026
NCBI-ProteinID:
XP_055507732
LinkDB
All DBs
Position
20:29858788..29959447
Genome browser
AA seq
1303 aa
AA seq
DB search
MIHSRKFLLGLINVLSNGPPSKFQALLIDLLEKGLLTKDGYRHYNQCEPEDLSRTILVSV
LGKDESYYQAFLSILCVHFPWISAGLQQVYNGRDQMWANGQSDIMRNQSYTIDQPPVKNH
SYLTLLQDGQMPLPGTCIQNGEAVAGAGFDDNHSELLEDLCEINLNCEYENRIDGILKYL
QDPRPSNTIALEQYFGDEISVRHTPLSNTTYHNSCSTDDETTCQNFLAPSCTKTKSRKRA
FEGDDRAQRGVSQDQAARPKHLRGDEENLSASPEHCPKMQDVHPPVTYSSDINHLKELMN
HVSQFGSNTHVIPVNKEDSVSNGTVVTPAGFPISTLPENAIVINGATYYLVKNDGSSNLD
FENVLPTSSVHSSPDSVHGSSPNVLETPRNSLPVISNDGSPISSLGSPPGATSPQYIDLH
WLQESPMNPQSVDTPMTPASVGSMGPDLETESSGEESAEPLLPTIKEPAKTKDVETCIET
VKEYLKDMTQHSYICHEHDEMLLEDIYVEASMVEGEAETKSERNATKCLDKECRIYDIEE
RERRAVNMDNLFHISGKQKNKTKIIALLGRAGIGKSVIVQRICHDWVNGSFGQFAFVFWF
KCRTLNFTKQYTLKDLLFQPFLPSLKNTDDVFQYLCQSPHKVLLIFDDFEDFQDHDGLLQ
PTACSSAEKECSVKMLIAGLLQRKLLEGCTVLFTARPKETFNQYLGRVDKIVEAQGFSPA
HVREFLHRYFEYLPVVEEVATCLQAQPYMLSLCRMPLLCRFICFVLKGQCRQGDALLTLP
PTLTDLFLNILQILLCSEVPGTPEVTASCKHSLLELSKRAFSGAQRHECVCTDSSRSAEM
TNFALQHGLLRPFLKSGEVEEQECGKTFPHSSLQNFLGALYLLFSDEIKCKGLSKLILLQ
NKKRKSQADWLDIVRRFLVGLATRVGDAFLTDLSGYSKANVKGKKLKCLWKYLSELEVGS
LGASKLLELCHCVYEARSVELTAQVAAKLSEKVSFRGARLTPPDIFVMLYVMQRAPGNFA
VDLRDTSIDLQGIKQFIELKNVTSFRVSTCDAVKLWEHLEQMELHDLLHLSLVKFSVNPF
EVKSLKDINDLDLLVQIHKESRFLSSARNTSGNELQGLPAVRNLQELVFALGPVNGPQGF
RKLTKILPSLIFLKYLDLEGPSSQKVEMSENKLGDEGAERLAEVLSNLTSLEKLILSRNQ
IADRGAQVLAKSLPDLKFLKTLSLYDNVIGDKGAEKLAEILPVMKSLKVLDVKFNKITDV
GAQRLTQSLKHCPHIEKIWIWSPTITHWMSEHIQQIDVRINLQ
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgattcactccagaaaattcctacttggattaattaatgtactctcaaatggacctcct
tccaaattccaagccttactgattgacttgttggagaaaggccttttaaccaaagatggc
tacagacattacaaccaatgtgaacctgaggatttgtcacggactatcctggtgtcggtt
ctcggcaaagatgaaagctactatcaagcatttctctccattctctgtgtccattttcca
tggattagtgcggggttacaacaggtttacaatggcagggatcaaatgtgggcgaacggg
caatctgacatcatgagaaaccaaagctacaccatcgaccaaccaccagtgaaaaaccac
agctatttgactttgctacaagatggccagatgccattgcctggcacctgcattcagaat
ggagaagcagttgctggagcaggttttgatgataaccattctgaacttttagaagattta
tgtgagataaatttaaattgtgaatacgaaaacagaattgacggcatcttaaaatattta
caggatccacggccatctaacacaatagcactggagcagtattttggtgacgaaatctcg
gttagacacactccattaagcaacaccacttaccacaactcgtgttcaacagatgatgaa
actacctgccagaatttccttgcgccatcctgcaccaaaacaaaaagcaggaagagagct
tttgaaggtgatgacagagcacagcgaggtgtgtcccaggatcaagctgcaaggcccaaa
cacttgagaggagatgaggagaatctatccgcttccccagaacattgtccaaagatgcag
gatgtccatcccccagtcacgtactcttcagatatcaaccatctgaaggaactcatgaat
catgtgtcacagtttggatcaaacacacatgtgatcccagtgaataaagaggactcggtc
agtaacggaacagttgtcactcctgcaggctttcccatttccacacttcctgagaacgcc
attgtcatcaatggagccacatactatttagttaaaaatgatggttcatcgaatcttgac
tttgaaaatgtgctaccaacatcatctgtgcattcttcacctgattccgtgcatggcagt
tctccgaatgttttagagacaccaaggaactctttgcctgttatctccaacgatggctca
cctatcagttctttgggcagtccaccaggtgccaccagtcctcaatacatcgaccttcat
tggttgcaagagtccccaatgaatcctcaatctgtggacactccaatgactccagcctct
gtcggcagcatgggaccagatcttgaaacagaatcatctggtgaagaatcagctgaacct
ttgctaccaacaatcaaggaacctgcaaaaacaaaagacgttgaaacttgcatagaaaca
gtgaaagaatatttgaaggacatgacccaacactcttacatttgccatgagcatgatgaa
atgcttcttgaagacatttatgtggaggcctcgatggtggaaggtgaagctgaaactaag
tctgaaagaaacgccacaaagtgtttggacaaagaatgcaggatctatgacatagaggaa
cgagagagaagagcagtcaacatggacaatctctttcacatctcagggaaacaaaagaac
aaaaccaaaataattgcactgttgggacgagcggggattggtaaaagtgtaattgtccaa
aggatctgccatgactgggtgaacggcagttttgggcagtttgcatttgttttctggttt
aagtgcaggacactcaactttactaagcagtacacattgaaggatttactcttccaaccc
tttcttccttcgctgaagaacacggacgacgtctttcagtacctgtgccaaagcccacac
aaggttttgctcatttttgacgactttgaagatttccaagatcacgacggcctccttcaa
ccaacagcctgcagctcggcagagaaagagtgcagcgtcaagatgttgatcgcaggcctt
ctccagaggaagctgctggagggatgcacggtgctcttcacagcgagacccaaagagacc
tttaaccagtacctgggcagagtggacaagatagttgaagcacagggtttcagccccgct
cacgtgcgggagttcctgcacaggtactttgaatacttgcctgtggttgaagaagtggcc
acgtgtcttcaggcacaaccatacatgctcagtctttgtcggatgcctttattgtgcaga
tttatctgttttgtgctgaaaggccagtgccgacaaggagatgctctgttaacgctgccg
cctactctcactgatttatttctgaacattcttcagatccttctatgctctgaagttcca
gggacaccagaggtcacggcctcgtgtaagcacagcctcctggagctcagcaagcgggcc
ttcagcggagcccagcgccatgaatgtgtgtgcacagactccagcaggtcagcggaaatg
acaaactttgctctgcagcatgggcttctgagacctttcttaaagagcggtgaggtggag
gagcaggaatgtggcaaaactttcccccattcatccctgcagaacttcctgggagcattg
tatttattgttttcggatgagatcaaatgtaaaggcctgtcaaaacttattttgctgcag
aacaagaaaagaaagtcacaggcagattggttggacattgtccgcaggtttctagttgga
ctggcaactcgggtaggggacgcctttctgaccgatctctctggttactcaaaggcaaat
gttaaaggcaagaagctcaagtgcctgtggaagtacttgtctgagctcgaagtcggctcg
ctcggtgccagcaaattgctggagctctgtcactgtgtgtacgaagcacggagtgtggaa
ctcactgcacaagtagctgcaaaactcagcgagaaggtgtccttcagaggtgcaagactg
actccaccggacatttttgtgatgctgtacgtgatgcagagggccccgggtaactttgct
gttgacctgagggatacgagcattgacctgcaggggatcaagcagttcattgagttgaag
aacgtgacctcctttagagtgtcaacttgtgatgcagtaaagctttgggagcacttggaa
caaatggaactacacgatctgcttcatctgtcccttgtcaagttttctgtcaatcctttt
gaagtcaagagtttgaaagacattaacgaccttgatttgctggtgcagattcacaaagaa
agtcgattcctttcaagcgcccggaacacatcagggaatgaactccaaggattgcctgct
gtgaggaatctacaggagctagtatttgcccttggccccgtgaatggaccgcaggggttt
cggaaactcacaaagattctaccatcactgatatttctgaaatatttagatcttgaagga
ccaagttcacagaaagttgaaatgagtgaaaataaattaggggatgaaggagcggagaga
ttggcagaggtgctgtcaaacttaacctcactagaaaaattgatattatcacgcaaccag
atagctgaccgaggtgcacaggtgctggcaaaatctcttccagacctgaaattcttaaag
actctcagtttatatgacaatgtcattggtgacaaaggcgcagaaaagttagcagaaata
ctcccagtaatgaaatcattgaaagttctggatgtcaaattcaacaaaattactgatgtt
ggagctcagagactgacacagagtttaaaacattgcccccatattgagaaaatatggata
tggagtcctacaatcacacactggatgtcagaacacattcaacagatcgatgtcagaatt
aatttacaatag
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