Leucoraja erinaceus (little skate): 129707249
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Entry
129707249 CDS
T09122
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
129707249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
leri03021
]
129707249
03036 Chromosome and associated proteins [BR:
leri03036
]
129707249
Transcription machinery [BR:
leri03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
129707249
Coactivators
SAGA/TFTC/STAGA complex
129707249
Chromosome and associated proteins [BR:
leri03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
129707249
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
tRNA-synt_1c
Motif
Other DBs
NCBI-GeneID:
129707249
NCBI-ProteinID:
XP_055508104
LinkDB
All DBs
Position
21:11656692..11742410
Genome browser
AA seq
1107 aa
AA seq
DB search
MAAGASDLLDDVFFSDVDEKVVSDLVGSLESQLSAPGPNASEQAGIRAQVVNNHVENTPG
MVSNNVELQTAENKMGLAGAELSTAAKIKVEESSEGKSVQINSQNAFGGGGLPCTTAGSG
AQQSPVINNARSQAPGVEQEQSTAAAAVTGSSAETSASGNIGQGKSVVISAMATPVSNHV
KTVTSNVQTLNGNNGMVINSHNAGNATTFTYSAAATTLPAVTMVNNGPGSVVKNTINTGS
PAASMPASSSAYTVIQTSFVSTQNVPSTVVSSQAAGPTVTLVRPPTHSGPVLSVASTPNG
SSTILNSTVNVTNLPAPAATGAPHQTSLLTLNSQPSSLSSNVTLNAGGQVVKSDFQPKTI
IQPPQQTLSSGILTSTTGSATSSVNNQSNTSTMVIGQTIQSGLQNVASNPGGISTQSAGM
GKGIINTVAQTLTRTAAVSTGPRTTITPQVIAPRLPQPPQHQPNIQNIQIPPGMVLVRSE
SGQLILIPQQALQQMQSQAQSQGTLTSRSATPTSAPPVQISTVQAPGTQIIARQVTPTII
KPVSQTQTAVQVTTALQRPPTVQSQIVISGATSTATTVQPGTQQRTVQTLTAATAAPTSQ
ILQPTASAETMENVKKCKNFLSTLIKLASSGKQSTETAANVKELVQNLLDGKIDAEDFTS
RLYRELNSSPQPYLVPFLKRSLPALRQLTQDSQAFIQQSQQQSSTQTTTALTAVVLGNTV
QQRPVVRTTSSTATVTSTLQHPVLSLAQTGQSVQAGKVFQQQQSTLARPQVTLTQTPMVT
LRQPQNRIMLTAPSQVQLKQLQTVPVMKQTVVPGSKAGLTYSVQTSVVQKNKLKEAAAAA
AAAAGGGSFRDDDDINDVASMAGVNLSEESARILATNSELVGTLTRSCKDEAFLFAAPLH
RRMLEIGKKHGITDVHPDVVNFVSHATQQRLQTLVEKISEVAQQRNITYKEDDRYEQLSD
VRTQLKFFEQLDQIEKQRKDEQEREILMRAAKSRSRQEDPEQLRLKQKAKEMQQQELAQM
RQREANLTALAAIGPRKKRKVDSPGPGIGAGAEGPSTGGTPGGSGVGTTRQFARQRITRV
NLRDLIFCLENERETSHSLMLYRAFLK
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgggggcttcagatctgttggacgatgtgttcttctcagacgtggatgagaaa
gtggtgagtgacttagtagggtccttggagtcccagttgtcggctccgggccccaacgcg
tcggaacaggccggaataagggcgcaggtggtgaataatcacgtggaaaacacacccggg
atggtgagcaataatgttgagctgcaaacagcagagaacaaaatgggactggcaggagca
gagctttccaccgcagccaaaatcaaagtggaggagagctccgaagggaaaagcgtacag
attaattctcagaatgcattcggcggcgggggtttgccctgcacgacggcggggagtggg
gcacagcaaagtcctgttatcaataatgcaaggtcccaggctccaggagtggaacaagag
cagagtacagcggcggcagcagtgacaggatcatcagcagaaacatcggcttcaggcaac
atcggtcaagggaaatccgtggtaataagtgcaatggcaaccccagtgtccaatcatgtg
aaaactgtcacctccaatgtccaaactcttaatgggaataatggaatggtgataaactct
cacaatgcaggaaatgccaccactttcacttattctgcagcagcaactaccttaccggcc
gttacgatggttaataatggacctggatctgttgtaaaaaacacgattaatacagggtcg
cctgcagcatctatgccggcatctagttctgcttacactgttattcagacgtcttttgtc
agtacgcagaatgttccttcgactgtcgtttcctcacaggcagcaggacccacagtgaca
ttggtgagaccaccaactcacagtggcccagttctgtcagttgcatcgacgccgaacggt
agtagtactatattgaactcaacggttaatgtaactaacttgccggctcctgctgccact
ggggctcctcatcagacttcacttctgactttaaatagtcaaccttcgagtttgtcaagc
aacgttactttgaatgctggtggacaggttgtcaaatccgacttccagcccaaaactatt
atacagccaccacagcagacactcagttctggaatattgacatcaacaactggtagtgct
acatccagtgtaaacaatcagtcaaatacaagtactatggtaataggtcagactatacaa
agtgggcttcagaatgtggcatcgaatcctggtggaatttccactcagtcggctggaatg
ggtaaaggaatcattaatacagttgcccaaactctaacaaggacagcagcagtgagcact
ggcccaaggacaactataacaccacaagttatagctccccggctccctcaacctccacag
catcagccaaacattcaaaatattcaaattcccccaggaatggtccttgttcggagcgag
agcgggcagttgatattgattcctcagcaagctcttcagcagatgcagtcacaagctcag
tctcaagggacactcacttcacgatctgccacacctacaagtgctcctccagttcagatt
tcaactgtacaggcaccaggaacacaaataattgcacggcaagtaacacctacaatcatc
aaaccagtttcccagacacagacggcagtgcaagtgacaacagcacttcagcgacctcct
actgtacagtcccagattgtaataagcggagcaacatctacagcaacaacagtccaacca
ggaacacaacagagaactgtgcagacattgacagcagccacagctgctccaacctcgcag
atattgcagcccacagcttcagcggaaacaatggaaaatgtgaaaaaatgcaaaaacttt
ctgtctacattgatcaaattggcttcaagtggtaaacagtcaactgaaacagctgccaac
gtcaaagaactggtgcaaaaccttttggatggaaaaattgacgcagaagactttacaagc
cgattatatagagagctcaattcatcacctcagccatatcttgtgcctttcctgaagcgg
agtttgccagccttgcgccaactcactcaagactcgcaggcttttattcagcaaagtcaa
caacaatcctcaactcagaccacaacagcgttgacagcggtggtactaggaaacaccgtt
cagcagcgacctgttgtgcgaacaactagttctacagctacagtaaccagcactctccaa
catccggtgttaagtttagcacaaactggacagtcagtgcaagctggcaaggtttttcaa
caacagcaaagtacactggccagaccgcaggtaacactcacccaaacgcccatggtaacc
cttagacaacctcagaatcgcatcatgctaacagcaccttcacaagtacagttgaaacaa
cttcagacggttcctgttatgaaacagacggtggtgccaggaagtaaagctggtttgact
tattctgtccagacttcagttgttcaaaaaaacaagcttaaggaagcagcggcggcggca
gcagcagcagcaggtggtggttcattcagggatgatgatgacattaatgatgtggcatcc
atggctggagttaacctctctgaagaaagtgcacggattttggcaacaaattcagaatta
gtgggcaccctgacaagatcatgtaaagatgaagcattcctgtttgcggctccattgcat
agaagaatgctggaaataggcaagaaacatggaattaccgacgttcatcccgatgtagta
aattttgtatcgcatgccacccaacagagattacaaacccttgtagaaaaaatatctgaa
gttgcacagcagagaaacatcacatataaggaggacgacaggtacgagcagttaagtgac
gtaaggacacagctcaagttttttgaacaacttgatcaaatagaaaaacagagaaaagat
gaacaagaaagggaaattctaatgcgagcagcaaagtcacgctccagacaagaggaccct
gaacaacttaggctaaaacaaaaggccaaagagatgcaacaacaggaactggctcaaatg
agacagagagaagccaatttaactgctttagctgccattggtcctagaaagaaacggaag
gttgattcgccaggaccaggaattggagctggggcagagggacctagtacgggcgggaca
ccaggtggctctggagttggaacaaccagacagttcgcacggcaacgaataacaagagtc
aacctcagggacctcatcttctgcttggagaatgagcgcgagacaagccattcacttatg
ctgtaccgtgcattccttaaataa
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