Leucoraja erinaceus (little skate): 129707353
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Entry
129707353 CDS
T09122
Name
(RefSeq) embryonic polyadenylate-binding protein-like
KO
K13126
polyadenylate-binding protein
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri03015
mRNA surveillance pathway
leri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129707353
09123 Folding, sorting and degradation
03018 RNA degradation
129707353
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
leri03019
]
129707353
03041 Spliceosome [BR:
leri03041
]
129707353
Messenger RNA biogenesis [BR:
leri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
129707353
mRNA cycle factors
Stress granule specific factors
129707353
Spliceosome [BR:
leri03041
]
Complex C
Other components
Complex C specific factors
129707353
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_occluded
RBD_DEAH11
DUF4523
Motif
Other DBs
NCBI-GeneID:
129707353
NCBI-ProteinID:
XP_055508303
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All DBs
Position
21:complement(19616526..19644370)
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AA seq
557 aa
AA seq
DB search
MNFEVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDESIDNKALYDTFSAFGNILSCKVV
GDESGSKGYGFVHFETQEAASRAINTMNGMLLNDRKVFVGHFKSHKEREAEFGSKALEYT
NIYIKNFGEDMSSGRLREIFNVFGKTLSVRVMTDQHGRCRGFGFVNFEKHEDALKAVAKM
NGKEINSRAVYVGRAQKKAERQSELRRKFDLIKQERNSRYQGVNLYVKNLDDGIDDECLR
KEFSPYGTITSAKVMTDGTRSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRK
EERKVHLTNQYIQRLANVRALPSPLVGSFQHLPPSGYFMPNLPQVQNRTAYYAASPVTPI
RPSQRWTAHPIRPPTPYHSVVPTNRGGAPRRGVTSISTMRQASTQVPQLPPNAQRVATIG
TQTVGPRTVLSGPMVRVLPQYKYTPGVCHTRHPPSPQQVPQPVPRVHGQMPLTTSMLAAA
LPLEQKQMLGERLFPLIHSLHPTLAGKITGMLLEIDNSELLHMLESQEILCSKVEEAVAV
LQAHQAKDDVQRKGAVV
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgaatttcgaggtgatcaaaggccggcctgtccgcatcatgtggtcccagcgtgacccc
tccctgcgcaagtctggtgtgggcaacatcttcatcaaaaacctggacgagtccattgac
aacaaggccttgtatgacaccttctccgcctttggaaacatcctgtcctgcaaggtagtc
ggtgatgagagtggatcaaaaggatacggctttgttcattttgagacgcaagaagctgcc
agccgagcgattaataccatgaacgggatgttgctcaatgaccggaaagtgtttgtcgga
cacttcaaatcccacaaggagcgggaagcagagtttggtagcaaggctttggagtacacc
aacatctacatcaagaactttggcgaggacatgagcagcggcagactacgggagatcttc
aatgtctttggaaagacgctgagtgtccgggtgatgacggaccaacacggacgttgcagg
ggctttggcttcgtcaacttcgagaagcatgaagatgccctcaaggccgtggccaagatg
aatggcaaggaaatcaacagccgggcggtgtatgtcggccgggcccagaagaaggcggag
cgtcagagtgagttgcgtcgcaagtttgatctgataaaacaggagcggaacagtcgctat
cagggagtgaacctctacgtgaaaaatctagacgatgggatcgatgatgaatgtctgagg
aaggagttctccccgtatggaactataaccagtgcaaaggtgatgacggacggaactcgc
agcaaaggctttggttttgtctgcttctcctcgccagaggaggccaccaaggctgtgacg
gagatgaatgggcgcatcgtcagcaccaagcccctatacgtggccctggcccaacgcaag
gaggaacgcaaggtccacctcaccaaccagtacatacagcgcctggccaatgtcagggcg
ctgcctagcccgctggtcggatccttccaacacctgcccccttctggatacttcatgccc
aatctaccccaggttcagaaccggactgcatattacgctgcctctccggtgactcccatc
cgcccatcccagcgttggactgcgcaccctatccgccctcctaccccctaccacagcgtg
gtccccaccaaccgaggaggagctccccggagaggggtcaccagcatcagcacaatgaga
caggcttccacccaggttccccagctgccccccaatgcccagagagtcgccacaatcgga
acacagaccgtcggtccacgtacagtgctgtccggaccaatggtgcgggtccttccacag
tataaatacaccccgggagtgtgtcacactcggcacccgcccagcccacagcaggtgccc
cagcctgtgccacgtgtccatggtcagatgccactcacgacctccatgctggctgctgcc
ctccccctcgaacagaagcagatgctgggtgagcgtctctttccgctgatccacagtctg
cacccgaccctcgccggcaaaatcaccgggatgttgctggagatcgacaactccgagctg
ctgcacatgttggagtctcaggagatcctctgctccaaggtggaggaggcggtggctgtg
cttcaggctcatcaggctaaagacgatgtgcagaggaaaggagccgtggtctga
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