Leucoraja erinaceus (little skate): 129707501
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Entry
129707501 CDS
T09122
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XIV) chain-like
KO
K08133
collagen type XIV alpha
Organism
leri
Leucoraja erinaceus (little skate)
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
leri00535
]
129707501
Proteoglycans [BR:
leri00535
]
Extracellular matrix (ECM) proteoglycans
Others
129707501
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
129707501
NCBI-ProteinID:
XP_055508564
LinkDB
All DBs
Position
21:complement(33326586..33440479)
Genome browser
AA seq
1754 aa
AA seq
DB search
MTTRTNGILAFTMAALHLLTQTEAQGRLKLSVLSEDRLQMKWKEVDGNKQGYKVRVKPSA
GTTEREIILKTNIAKATVVGLSPTQEYTLQILLINGIREQHYAKRKFIINVLKEHRSKKA
HKKKQNGRIMGSAVENGTRIDLGIPTSNTMSLNHTEMIHGAQSRKVKNSERRKSSDKTSE
NKMRKPSTSAAETSQAKNATQSLPKNRRKMGQGKRRDEAVPEEPPTQGSQYTCQARAVAD
IIIVIDGSWSIGRANFRLVRQFLTNLITPFHVGLDGIRIGLIQYSGEPRTEWDLDTYSTK
NEVLEAIQRMRYKGGNTYTALALDHIYRNALKPSAGARPDAAKFLILLTDGKSQDDVNSS
AQSLKNAGVEIFAIGVKNADEAELKQIASDPLDLHVYNVLGFDLLDSLSDKLSKILCGQM
MARANKVKSGHRKADNGAMLYSTPTNLVTSEITARSFRVSWTHSPKQANKYRVMYYPTTG
ENPEEVIVDGTESSVNLDNLHSLTEYQIAVFPVYEGFDGEGLRGIETTSSFPSLNNLLIY
DVTHNSMRVSWEPQDDASHYLILYEQVSSDEVDDGKEVKVDAQYTDIEIEGLSPHAEYIV
TAYALYGDETSEPVTAQQATLSLDPPRGVHVTDVHHSSVKVSWERTSRKVNGHRVVYVSA
SGNDPKQTEVGGNITSVLLQNLTSLTKYVISVLSIYGTLSSAPVTVTTETVKVPSPSNLQ
VTEFSNTSLTITWKHASNDVALYEIKWIPLSGGKLYELDVQGNANTAVLQGLARNTEYQV
SLSALYNDTAESHAIVLRYNTYSRNPPVNLVIEAKTPTSLQVSWDHLNDNVQLYKVHYVS
VTGHHTGQTTTPVKRNSVTLKPLISDTVYNVTITAVYASGDEASISGGGKTLPFLPPANV
RITDITFNYFRVTWEKPEARPLGFSVLFYSDSDQLAHITTDGSRDSIEIKDLQSGQEYNV
SVTAVYTNGQSPAVQQRVTTLHLNVTDLRANQVRFTSMCAQWEGFVGSSGYRIVLESLTE
GKVQENTLRAGTNKYCFHHLFPNSQYKITVYTRLREVTGSPVSVLQSTLPLPIRSTFASS
TPPIDLKDCRAVTADLAFIIDGSTSVGEANFRKIISFVHDSVSVFDKLGPEGIQVSVRQF
SRHMTDEIQHSSFRNREQLLGSIYDIPYRGTDTSTVKDGRASDGLFSTNESKERKSVHKL
LVVITGGTVLGEISQTLQQLALEGFFIIVLGVDDVDEATITDVTSTPSLRAAFYVRDFSD
LNNIGGKVIVSICQTVSTTCALTNIRGTVVPGINMMEAFGLTDKEFSELEGVAMDSDIFT
GSPSFSIFENAHLIQNTRNIHPKELPTKQTMTLLFRLQPNATDEPFALWQIVDEHFHPLV
GIVLDSKLQTLSYFNQDKKNVLQKVTFSQAEVKKLFFGSYHKVHIAVSRNTVRLDVDCVK
VGEERINGVGKISHDGFEVLGKLVNNRGAINTSVPFQLQAFEMVCNNSWSSMDRCCDLPA
WRDDVTCPANVPTCTCSSLITGAPGPSGPSGPPGARGQQGVCGEPGPQGPEGPAGNRGPK
GLEGEPGPPGPRGLSIRGPAGPPGEKGQSGEPGQRSNQGLPGPRGPPGRDGIQGPKGTRG
LEGSIGPPGLPGTRGPTGIVGPTGYQGDQGVPGDVGPSGLPGAKGEKGEKGEPQSLSAVY
QMVSQACEELVQNHMLKFDLVLNEFSKNPTPVRIIQGPAGEVGEPGKPDHRETEERREYQ
ACLALLAKPATLER
NT seq
5265 nt
NT seq
+upstream
nt +downstream
nt
atgactacacgaactaacggtatcctagcctttacaatggcggcacttcacctgctcacc
caaacagaagcacaaggtcgattgaaattaagcgttctgtctgaggacagacttcagatg
aaatggaaagaagtggatggaaacaaacagggctacaaagtccgagtgaagccttcagca
ggtactactgaacgggaaataatcttgaagaccaacatagcaaaagcaactgttgtgggt
ctttctcccacgcaagagtacactcttcagatattactgatcaatgggattcgcgaacaa
cattatgccaagaggaagtttatcatcaatgtcctaaaagaacaccgttcaaagaaagct
cacaagaagaaacaaaatggaaggatcatggggtcagcggtggagaatgggactcgcatc
gaccttggcattcctacaagcaatacgatgagcctgaatcacacagaaatgatacacgga
gcacaatccaggaaagtgaagaattctgagcgaagaaagtcgtcggacaagacgtcggag
aacaaaatgcgaaaaccaagcacgtctgctgctgaaacgtcgcaagcgaaaaatgcaact
caaagcttgcctaaaaatagaaggaaaatggggcagggcaaacgcagggacgaagctgtg
cctgaagaacctccaactcaaggctcccagtatacgtgccaagcaagggctgttgctgat
atcatcatcgtaatcgatggatcatggagtattggcagagcaaacttccggctggtgcga
cagtttctgaccaacttaattacacctttccatgttggtctcgatggaattagaatagga
ttaatacagtacagtggagaaccacggacagagtgggaccttgacacatattccaccaag
aacgaggtgctggaagcaattcaaagaatgcgttacaaaggaggcaacacttacacagct
ctagccctggaccacatttacagaaacgccctcaaaccatcggcgggcgcccggccggat
gccgctaagttcctgatcctcctcaccgacggcaagtcccaggacgacgtcaactcatcg
gctcaaagcctgaagaacgcgggcgtggagatatttgccattggtgtaaagaatgcggat
gaggctgagctgaaacaaattgcatccgatccccttgacctccacgtgtacaacgtcctt
ggattcgaccttctcgactctctcagcgataaactctcaaagatcctttgtggacagatg
atggcaagggcaaacaaagtgaaaagtggacatcgcaaggctgacaatggcgccatgtta
tattcaaccccaacaaatctggtgacatctgagataacggccaggagtttccgagttagc
tggacgcacagccccaaacaagctaacaaataccgtgtgatgtattacccaaccaccgga
gaaaatccagaagaggtgattgtggatggaacggagtcctctgtaaacctagataatcta
cactcccttactgaatatcaaatcgcagtgttccccgtctacgaaggttttgatggtgaa
ggtcttcgaggcatcgaaacgacatcatctttcccatccctgaataatctcctgatctac
gatgtcactcacaacagcatgagagttagctgggagccgcaagatgatgccagccattat
ttgatcctttacgagcaggtttcgagtgatgaagtggacgatggaaaggaggtcaaggtt
gatgctcagtacacggacattgaaatcgaagggctatctccgcacgccgagtacattgtg
acagcgtacgctttatacggagatgaaacgagtgaaccagtaacggcgcagcaggcaaca
ctgtcgctggacccaccacgaggggtgcacgtgactgacgtccatcacagcagcgtcaag
gtgagctgggagagaacatcgaggaaagtgaatggacatcgtgtcgtctacgtgtcagcc
agtggcaatgaccccaagcagactgaagttggcgggaacattacaagcgtactgttgcaa
aacctgacctcgttgacaaagtatgtgatttctgtcctttccatatacggtaccctgagc
tccgccccagttaccgtcaccacggaaacagtcaaggttccgtccccctcgaatctgcaa
gtgacagaattttcaaacaccagtctaactatcacatggaaacacgcctccaatgatgtt
gctctgtacgagataaaatggattccacttagtggaggaaaattatatgagctggacgtg
caagggaacgccaacacagcggtattgcagggtctggccaggaacacagagtatcaggta
tcgctctcggctctgtacaacgacacggcagaaagccacgctatcgtgctgcgttataac
acgtattccagaaatcctccagtaaaccttgtcatcgaagccaagacaccgacgagcctc
caagtgagctgggaccatctgaacgacaatgtccaactttacaaagtacattacgtgtca
gttacagggcaccatactggtcaaacgaccacacctgttaagagaaacagcgtaacatta
aaaccacttatttctgacacggtgtacaatgtgacaattactgcagtctacgcttcaggt
gacgaggccagtatatccggaggaggcaaaaccttgccatttcttccaccggctaacgtg
cgaatcactgatattacctttaattacttccgggtgacttgggaaaagcccgaggcacga
cctttgggcttctctgtgcttttctattcagattccgatcaactcgcacatataacgact
gatgggagtagagactccatcgagatcaaggatcttcagagtggccaggaatataatgtc
agtgtgactgccgtctatacaaatggccagagccctgccgttcaacaaagagtcaccaca
ttacacttgaacgtcacggatcttcgagccaaccaggtgcggttcacctccatgtgcgct
cagtgggaagggtttgttggatcttctggctacaggattgtgctggagtcactgacagaa
ggaaaggtgcaagaaaatactctgcgcgcaggaacaaacaagtactgtttccatcatcta
tttcccaatagtcaatacaaaatcacagtctacacaagactgcgagaagtcacaggatct
ccagtttctgttcttcagtcgacattgccacttccaatcagatcaacatttgcttccagc
actcctccaatcgatctgaaagattgccgtgctgtcacggctgacctggcctttataatt
gacggctcgacgtcggtaggggaagcgaacttcaggaaaatcatctccttcgtccacgac
agcgttagcgtttttgacaaactcgggccagaggggatacaggtatcggtgaggcagttt
agccgtcacatgacagacgaaattcagcacagctcctttagaaatagagagcaattactg
ggaagcatctacgacataccttacagaggaacggacaccagcacagtcaaagatggcaga
gcatcggatggtttgttttccacgaatgaatcgaaggaaagaaaaagtgttcacaaactt
ttggtcgttatcactggcgggacagtccttggtgaaataagccaaacattgcaacagttg
gcgttggaaggtttttttataattgttcttggcgtggatgatgttgatgaggcgactatt
actgatgtcacaagcacgcccagtctcagagcagctttttatgttcgtgacttcagtgac
ttgaacaacattggaggcaaagttattgtgtccatttgtcagaccgtttccacaacttgt
gctttgacaaatattagaggcactgtggtcccaggtataaacatgatggaggcatttggc
ttaacagataaagagttctcggagcttgaaggtgttgctatggattctgacatcttcaca
ggttcaccatcatttagtatttttgaaaatgctcatcttatacagaatacgaggaatatc
caccccaaagaactacccacaaagcagaccatgactctgctgttccgattacagccaaat
gccactgatgaaccatttgcactgtggcagattgtggatgaacattttcaccctctcgtt
ggaatagtccttgattctaaactgcaaactctcagctacttcaaccaggacaagaaaaat
gttttgcagaaagtcactttcagccaagccgaagttaagaagcttttctttggaagttat
cacaaggttcatatcgcagtgagtaggaacacagttaggcttgatgttgactgcgtgaaa
gttggagaggaacggataaacggtgttgggaaaatctcccatgacggatttgaggtgctt
gggaaactggtaaacaacaggggtgcgatcaatacttcagtaccatttcagttgcaggca
tttgaaatggtttgcaataattcatggagcagcatggacaggtgttgtgacctaccagcc
tggagagatgatgtaacgtgcccggctaacgtcccgacctgcacttgctcatcgctgatc
acaggagcaccaggaccttcaggcccatcaggtcctcctggtgcgaggggccagcagggt
gtatgcggggagccaggaccacagggcccagaaggtccagcgggcaatcgaggtcccaag
ggattggagggtgaaccaggaccaccagggcccagaggactaagtatacgaggtcctgct
ggtccaccaggtgagaaaggccaaagtggtgagcctggacaaagaagtaatcagggactt
ccaggacctcgaggtcctccaggaagagatggaatccagggaccaaaggggacaagggga
ctggaaggatcgattggacccccgggacttcctgggacaagagggccgacaggaattgtg
ggaccaacaggttatcaaggagaccagggcgttccaggcgatgtggggccttctggactt
ccgggtgccaaaggagaaaaaggggagaagggagagccacaatccctctccgcagtgtat
cagatggttagccaagcctgcgaggagcttgttcagaatcacatgttgaaatttgatttg
gtcttgaatgagttctcaaagaaccccacgcctgtacggattatccagggaccggcaggt
gaggtcggagaacccggaaaaccagaccaccgggaaaccgaggagcgccgggaataccag
gcgtgcctggcactgctggcaaagccggctaccctggagagatag
DBGET
integrated database retrieval system
