Leucoraja erinaceus (little skate): 129708070
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Entry
129708070 CDS
T09122
Symbol
topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
129708070 (topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
leri03032
]
129708070 (topbp1)
03400 DNA repair and recombination proteins [BR:
leri03400
]
129708070 (topbp1)
DNA replication proteins [BR:
leri03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
129708070 (topbp1)
DNA repair and recombination proteins [BR:
leri03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
129708070 (topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
129708070
NCBI-ProteinID:
XP_055509581
LinkDB
All DBs
Position
2:complement(26568513..26647649)
Genome browser
AA seq
1472 aa
AA seq
DB search
MANQESFLVKFIKTKEKDSEYFTKAFQAIKEFQSEEFLQIVNEDETFSLKIKDNSLYVCD
PFEGAVYDHLKKLGCRIVGPQVVIFCLQHQRNVPEAVHPVYSLVMADVVVSCTSLEKKTR
DDVHQRVQLMGGRIIRDYNTSVTHLIAGEVGSKKYLVAASLHKPIVLPSWVSACWEKAQQ
RMIDLADVNMEEHLCPPFLGCTICVTGLSSSDRQEVQRATLENGGRYTGQLKINECTHLI
VHEAKGQKYECAQKWNIFCVSIQWFFDSIKQGACQDEGNYKVESDRKSAPSTSTPTNIGD
ALNPRPLSDVSHIANISMNGINETALTSAMTTRLEMPDHQLEALDLTLSVVPEDLLDGCK
IYLSGFGGKKLDQLRRMINFGGGVRFNQTSEDVTHVIVGEEDKELKQCLNKLSHRPHVVT
AKWLVDCFCEKRLLAAEPYFCPGYQPAVPVPGRGGGDQTHSTLKGSNASRAAAARCTAEQ
QADDDLLLQYLENDVTLDVPENMERTDRNVTGNLHNTVLENNETASTSINQTRTTDDGLF
WKKRFLIFGFTKEDETYMAQLIESNSGQVLPPHGRAMADYAVVPLLGTCVEATVGEVVTN
TWLAMCIDRQSILPVPSNALFTPLSYVEGSYPLNNCVLSISQFTGVERDAIFNIAELLGA
RVQEFFVRKVNVKKDMLASTHLVLQEPQGSKYEAAKKWSLPAVSPAWIFESARTGKKADE
SNYFIDNCTKPVEEVNGAATELCRMPEPSPELSTTKLPSAVTPLDINRFQSKAFQMVMSQ
QNKVDKAEAGEPSLQKEAKLRLDTPSKFLCKDKLFKPSFDVQDALAALETPTNPNQRHRK
MSTPLSEVIGRNLKVALANSRRNALAPSATSPQFHAPEPAKDEPEILADVVICVSKKLGK
RQGDLNAIAASLGADYRWSYEEMVTHYIYQGKQNDTSREYKSVKEKGVHVVSEHWLFACA
DEQRKVPEYLYPHTYNPNMSLDISAVHETKVSTRLCPSEARCGDKQTTNLADEQAESEND
EQILEAEKNRQNQEFGDLTETSEMRENFQRQLQEIMSATRVEKSGGHRGAVSRGILDHSM
STDCAPRTGRSRALESLRCSRPPVMDINTEPSQSEQIIWDDPTAREERAKLANNLQWPGS
PSQYSEQLEGHNTKHPESFTDSEMATIEIPQQVAAGNGDVAAKDDHLSPTPQAPSIAFPL
ARPPVAPQPKEQDAVEKNKEPEAIPRRFQLSSLNPQERIDYCHLIEQLGGVVLDRQCFDA
SCTHIIVGQPLRNEKYLASMAAGKWVLHRSYLEACRAESRFIQEENYEWGSSFILDVLPG
ISAQQRKLAVAAMRWRKRLDMLRQKNDSAEIGAFNGWTVILNFDHNKEAGFRRLLLSGGA
KVLPNHLPTDYQEATHLFVDFGKLKVEERRVNLTEALEHDVLCLKPEFIADYLIQERPPP
VENYFLTTEPGTTARKRKVSDDHADSRKCRKT
NT seq
4419 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaccaagagtctttcctggtgaaattcataaaaacgaaggagaaagattctgaa
tatttcacaaaagcttttcaggccattaaagaatttcaatcagaggaatttctgcagatt
gtcaacgaagatgaaacatttagtttaaaaataaaagacaattcgctttatgtatgtgac
ccatttgagggagcagtttatgatcatctaaaaaagcttggttgcaggattgtcggtcca
caagtggtgatattttgtcttcagcatcaacggaatgtacctgaagccgttcaccctgtc
tacagtttggtcatggctgacgtggtcgtttcatgcaccagcctggagaagaaaacccga
gacgatgtgcatcagcgggtccagctgatgggtggtcgcatcatccgtgattacaacacc
tcagtcactcacctgatcgctggggaggttggaagcaagaagtacctggtggcggccagt
ctgcacaaacccattgtgcttccatcctgggtcagtgcctgctgggagaaagctcagcag
agaatgattgaccttgcagatgtgaacatggaagagcacctgtgccccccgttcctgggc
tgtaccatctgtgtgacgggactcagcagctcggacaggcaggaggtgcagcgagctacc
ctggagaacgggggtcgctacaccggacagctgaagataaacgaatgcacacacctcatt
gtgcacgaagctaaaggtcagaagtatgaatgcgcacaaaagtggaatatattctgcgtg
tccatccagtggttctttgactccataaagcagggtgcttgccaagacgaaggcaattat
aaggttgaatcagacagaaaatcggctccaagcacctcaaccccgacaaatattggagac
gcactgaaccctcgacctctttcggatgtgagccacattgccaacatcagcatgaacggc
atcaatgagactgcactcacctccgccatgaccactcggttggagatgcctgaccaccag
ctcgaagccttggatctcacgctttctgtcgtcccagaggacttgttggatggatgcaaa
atctatctctctggatttggcggtaaaaagttggaccagttaaggcggatgatcaacttt
ggaggtggagttcggtttaatcaaacctctgaagacgtcacgcacgtcatcgtgggggag
gaagacaaggagctgaagcagtgtttgaacaaattgtcgcacaggccgcacgtggttacg
gcaaagtggttagtggattgcttctgcgagaaacgtctccttgctgccgagccgtacttc
tgtccgggttatcagcccgctgttccagtgcccggacgcggcggcggagaccaaacgcac
tccactctgaagggcagtaacgcatcgagagcagccgcagcccgttgcaccgcggaacag
caggctgacgacgacctcctgctgcagtacctggagaacgacgtgactctagacgttcct
gaaaatatggagagaactgaccgtaacgtaactggcaacctccacaacaccgtgctggaa
aataacgagaccgcaagcacttctataaaccaaacaagaactacagacgatggactgttt
tggaaaaagcgatttctaatatttggctttaccaaagaagatgaaacctacatggctcaa
ctaatcgagagtaacagtgggcaggttctaccaccacacggccgagctatggcagactat
gccgtcgtgccgttattgggcacctgcgtggaagcaacagtgggcgaagtggttacaaat
acatggctggcaatgtgcatagatcggcagtccattctcccggtgccctccaatgccttg
tttactcctctatcctacgtggaaggaagctatccgctgaacaactgtgtactttctatt
agccagttcactggagtggaacgcgatgcaatattcaacatagcggaattacttggagcg
agagtgcaggagttttttgttcggaaagttaacgtgaagaaggacatgcttgcaagcacc
catttggttctgcaagagccgcaaggctccaagtacgaagctgcaaagaagtggagttta
ccagcagtgtctccagcttggatctttgaatcggctcgaactgggaagaaggctgatgaa
agcaactacttcatagataattgcactaagcctgttgaagaagtgaatggggctgccacc
gagttgtgccgaatgcctgaaccgtcacccgagctctccacgaccaaactacccagtgct
gtgactccgctggatatcaatagattccagagtaaagccttccagatggttatgtctcaa
caaaacaaagtggacaaagcagaagcaggcgaaccaagtctgcagaaggaagcaaagtta
cgacttgatacgccatcaaagttcctctgtaaggacaagctcttcaaaccatcatttgat
gttcaggatgcattggcagctctggagactccaaccaacccaaaccaacgtcacaggaag
atgagtacccccttatccgaagtgattgggaggaatctgaaggtggctttggctaacagc
agacgcaatgcgctggcaccatctgcaacaagcccgcagtttcatgcgcctgaaccagcc
aaggacgagccggagatcctagcggatgttgtgatttgtgtgagtaagaagcttggcaag
cgacagggcgacttgaacgcaatagcagcctctctgggagcagattacaggtggagttat
gaagagatggtgactcattacatctaccagggcaagcagaatgacaccagtcgggaatac
aagtccgtcaaagaaaagggcgttcacgttgtctccgaacactggctctttgcttgtgct
gacgagcagaggaaggtgcctgaatatctttaccctcacacatacaatcctaacatgagc
ctggatattagtgccgttcatgaaactaaagtgtccacgcgcttgtgcccttctgaagca
agatgcggggataagcagaccacgaaccttgctgatgagcaagctgagagtgaaaacgat
gaacaaattcttgaggcggaaaagaatcgtcaaaatcaagagtttggagacttgacagaa
acctccgaaatgagggagaattttcagcgccagctgcaggaaataatgtcggccacgcga
gtggagaagtcgggcgggcaccgcggagcggtatcgaggggaatactggaccactccatg
tccacagactgcgccccacgcacaggccgcagcagggcactggaatccctcaggtgttca
cgcccacctgtcatggacatcaacacggagccgtcacaaagcgagcagatcatctgggat
gacccgacggcccgggaagagcgggccaagttggccaacaacctgcagtggcccggcagc
ccgtcccagtactcggagcagctggaggggcacaacaccaagcacccagagtccttcacc
gattcagaaatggccacaatagaaatcccacagcaggtcgcggcagggaacggcgacgtt
gcggcgaaggacgaccatctcagccccacgccgcaagcacccagcatcgccttccccctg
gccaggccgccagtggcaccacagcccaaggaacaggatgctgttgagaagaacaaggag
ccagaggcgatcccgaggagattccagctgtcatcactcaacccccaggagcggattgac
tactgccatctcatcgagcagctaggtggtgtggtgctggatagacaatgctttgatgct
tcatgtacacacatcatcgttgggcagccactgcggaacgagaagtatttggcttctatg
gcggctggcaagtgggtcctgcatcgatcctacttggaggcgtgcagagccgagtccagg
tttatacaggaagagaactacgagtggggcagcagcttcatcctggacgtgctgcctggg
atcagtgcgcagcagagaaagcttgcggtggcggcaatgcgatggaggaagaggctggac
atgctgagacaaaagaatgacagtgcagagattggtgcgttcaatggctggacggtcatt
ttgaactttgaccacaacaaggaggcaggcttcaggaggcttctactctctggaggggcc
aaggtcctccccaatcacttgcccacggactaccaagaggccacccacctgtttgttgac
ttcggcaagctgaaggtggaggagaggagggtgaacctgaccgaggccctggaacacgac
gtactctgcctcaaacccgagttcattgccgactatctgatacaggagcgaccccctccc
gttgagaattacttcctgaccaccgagcccgggaccacagcgcggaaacgcaaggtgtcc
gacgatcacgccgactcgagaaagtgccgcaaaacgtga
DBGET
integrated database retrieval system
