KEGG   Leucoraja erinaceus (little skate): 129708185
Entry
129708185         CDS       T09122                                 
Symbol
alyref
Name
(RefSeq) THO complex subunit 4
  KO
K12881  THO complex subunit 4
Organism
leri  Leucoraja erinaceus (little skate)
Pathway
leri03013  Nucleocytoplasmic transport
leri03015  mRNA surveillance pathway
leri03040  Spliceosome
leri05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:leri00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    129708185 (alyref)
  09122 Translation
   03013 Nucleocytoplasmic transport
    129708185 (alyref)
   03015 mRNA surveillance pathway
    129708185 (alyref)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    129708185 (alyref)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:leri03019]
    129708185 (alyref)
   03041 Spliceosome [BR:leri03041]
    129708185 (alyref)
Messenger RNA biogenesis [BR:leri03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     129708185 (alyref)
    TREX complex
     129708185 (alyref)
Spliceosome [BR:leri03041]
 Complex C
  Other components
   EJC/TREX
    129708185 (alyref)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    129708185 (alyref)
SSDB
Motif
Pfam: RRM_1 FoP_duplication FYTT
Other DBs
NCBI-GeneID: 129708185
NCBI-ProteinID: XP_055509773
LinkDB
Position
23:8936335..8944269
AA seq 267 aa
MGDKLDMSLDDIIKLNRQKSPGGRGGRGGGGRGGGGGGGMGRGSGRIGAGGLAGRGAAGV
RGGGGGGGGLGVGLMRNRQSAMRGRNRPAPYSRPKQLPDKWQHDLFDSGFGASGGVETGG
KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQY
NGVPLDGRPMNIQLVTSQIDAQRRPIVGGNRAISRIRGIAFGGGNRRSRGGNRGGRGGRG
GRNLRQQLSAEELDAQLDAYNARMDTS
NT seq 804 nt   +upstreamnt  +downstreamnt
atgggcgacaaactcgacatgtccctggacgacatcatcaaactgaaccggcagaaaagc
ccgggcggccgcggaggaaggggtggcggaggccgcggcggaggtggcggcggcggcatg
ggccgcggatcagggcgaatcggagcgggcggcctggccgggcgaggagcggctggagtc
cgaggcggcggcggcggcggagggggcctgggtgtaggcctcatgcgcaacagacagagc
gcaatgcgagggagaaaccgaccagctccttacagcaggccgaagcaactcccagacaag
tggcaacatgacctttttgacagtgggtttggagctagcggaggtgttgagactggtgga
aagctcttggtgtcgaacttagactttggcgtgtctgatgcagatatccaggaacttttt
gctgagtttggaacattgaagaaagcagctgtacattacgatagatccggtcgaagtttg
ggaacggcagatgtacactttgaacggaaggcagatgctttgaaagccatgaagcagtat
aacggtgttcccttggatgggcgaccgatgaacattcaactagttacctcacagattgat
gcccaaagaagacccatagttggaggaaacagggccataagccgaattcgtggtattgca
tttgggggtggaaatagacgttccagaggaggcaacagaggcggaagaggtggtcgaggt
ggaagaaatttgcggcagcagctttcagcagaagagctggatgcccaattggatgcttat
aatgctaggatggacacaagttaa

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