KEGG T09122: 129708316

Leucoraja erinaceus (little skate): 129708316

Entry

129708316         CDS       T09122

Name

(RefSeq) cleavage and polyadenylation specificity factor subunit 4-like

K14404

cleavage and polyadenylation specificity factor subunit 4

Organism

leri Leucoraja erinaceus (little skate)

Pathway

leri03015

mRNA surveillance pathway

Brite

KEGG Orthology (KO) [BR:leri00001]
09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    129708316
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:leri03021]
    129708316
   03019 Messenger RNA biogenesis [BR:leri03019]
    129708316
Transcription machinery [BR:leri03021]
Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     129708316
Messenger RNA biogenesis [BR:leri03019]
Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     129708316

SSDB

Motif

Pfam:

zf_CCCH_4 Torus zf-CCCH zf-CCCH_2 zf-CCCH_3 zf-CCCH_4 zf-CCHC

Other DBs

NCBI-GeneID:

129708316

NCBI-ProteinID:

XP_055509960

LinkDB

Position

23:complement(18041788..18057096)

AA seq 225 aa
MQELIAGLQKMRFDFEIVLEQQRGIPDVPFSGMDKSGSAVCEYFIKGECVKDNLCPLRHT
YGAKSVVCKHWLRGLCTMGDQCEFLHEYDMTKMPRCFFYSNYGECSKRECPFLHIDSEVK
IHDCPLYGQGFCKNGPLCKNKHTKKVMCVNYLVGFCPEGTGCNFSHPNNKFTESKETDTF
SQYPLNRETKFNRGYRSLDKVLCFKCWEKGHYANKCSNRNLGYRQ

NT seq 678 nt +upstreamnt +downstreamnt
atgcaggagctgatagctggtttacaaaagatgagatttgattttgagattgtcctggag
cagcagagaggaattccggatgtgccattttctggcatggacaaatctggttctgcagtc
tgtgagtattttattaaaggtgaatgtgtaaaagataatttgtgcccattacgccacacc
tatggtgcgaagtctgtcgtgtgcaaacactggctccgaggtctgtgcactatgggggat
cagtgtgagtttttgcacgaatatgacatgacaaaaatgccacgctgcttcttctattca
aattacggggaatgcagtaaaagagagtgccctttcctgcacattgattcagaggtgaaa
attcacgactgcccattgtatggccaaggattctgtaaaaatggccctctgtgcaagaat
aaacacaccaagaaggtcatgtgtgtgaattaccttgtcggcttctgtcctgaaggaaca
ggatgtaatttttcacacccaaataataaatttactgaatcaaaggaaacggacacgttc
tctcagtatcctttgaaccgggagacaaaattcaaccgaggctacaggtctctggacaaa
gtcttgtgcttcaagtgttgggagaagggccattacgctaacaagtgcagcaaccggaat
ctaggctacagacaatga

DBGET integrated database retrieval system