Leucoraja erinaceus (little skate): 129708362
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Entry
129708362 CDS
T09122
Name
(RefSeq) LOW QUALITY PROTEIN: chondroadherin-like
KO
K06248
chondroadherin
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri04510
Focal adhesion
leri04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129708362
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129708362
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
leri00535
]
129708362
Proteoglycans [BR:
leri00535
]
Extracellular matrix (ECM) proteoglycans
Small leucine-rich proteoglycan (SLRP) family
class IV
129708362
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Motif
Pfam:
LRR_8
LRR_4
LRR_1
LRR_5
LRR_14
LRR_9
LRR_LRWD1
LRRNT
LRRCT
Motif
Other DBs
NCBI-GeneID:
129708362
NCBI-ProteinID:
XP_055510027
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Position
23:19966314..19982206
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AA seq
357 aa
AA seq
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MQPLSWLWLVPLVAAATAAPRCPPGCHCLGDLLHVVCENKGLRKVPRVSNKVRLLSLQQN
NFPVLPAGGFSTLKSLVSLHMQGCSIREIRAGAFRRLKKLVYLYLSNNEISSIRPGAFQD
LSQLTYLYLDHNRISDLSKGLLSPLNSLFLLQLSHNRMGQIGPGSFAGARELRWLHLSNN
GLTSIRPRALDDVENLATLHLDDNKLSSYPAAALSKLRVVEELRLDSNPIRTVPDNAFHS
FGRYVERIWLTHMQLEKFSDGAFNGVTALSALHLDENKLRSLPQSLTFTKMKNLTMSNNP
WDCTCSLAAARRWMDTSRNHPDGTCASPSQYRGQEIQETNAFQACKERAKRNRMKPL
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
atgcagcccttaagctggctctggcttgtgccgctagtggccgcggccacggccgcccct
cgctgcccgcccggctgccactgccttggggacctgctgcacgtcgtgtgcgagaacaag
gggctgcgcaaggtgccgcgggtgagtaacaaggtgcggctactgagcctgcagcagaac
aacttcccggtgctgccggccggcggcttcagcaccttgaagagcctggtgtcccttcac
atgcaaggctgcagcatccgagagatccgggccggggctttccgccgcctcaagaagctc
gtctacctctacctgtccaacaacgaaatcagctccatccggcccggcgccttccaggac
ctgtcgcagctcacctacctctacctggaccacaaccgcatcagcgacctgtccaaggga
ctgctcagcccgctcaacagcctcttcttgctgcaactcagccacaacaggatgggccag
atcgggccgggcagcttcgccggggcgcgggagctgcgctggctgcatctcagcaacaac
ggcctgacctccatccgcccgcgggcgctggacgacgtggagaacctggccacgctgcac
ctggacgacaacaagttgagcagctacccggcggcggcgctcagcaagctgcgggttgtg
gaggagctccggctcgactccaaccccatccgcaccgtgcccgacaacgctttccactcc
ttcggcagatacgtcgagcgcatctggctgacgcacatgcaactggagaagttttcagat
ggagctttcaatggcgtcactgccctctccgctctccacttggatgaaaacaagttgcgg
tctctgcctcaaagcctcacctttaccaaaatgaaaaacttgaccatgtccaacaacccg
tgggactgcacttgttcactggctgctgcccgaagatggatggacaccagcaggaaccac
cctgatggaacctgcgcttctcccagccaataccggggtcaggaaatccaggaaaccaac
gccttccaggcctgcaaagaacgtgcaaaacgcaaccggatgaagccgctctga
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