Leucoraja erinaceus (little skate): 129708452
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Entry
129708452 CDS
T09122
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein-like isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
leri
Leucoraja erinaceus (little skate)
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
leri03019
]
129708452
03036 Chromosome and associated proteins [BR:
leri03036
]
129708452
Messenger RNA biogenesis [BR:
leri03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129708452
Chromosome and associated proteins [BR:
leri03036
]
Eukaryotic type
Gene silencing
piRNA pathway
129708452
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
Ago_hook
UBA
RRM_1
UBA_7
RRM_occluded
DUF4718
Motif
Other DBs
NCBI-GeneID:
129708452
NCBI-ProteinID:
XP_055510205
LinkDB
All DBs
Position
23:complement(31670710..32111703)
Genome browser
AA seq
2007 aa
AA seq
DB search
MKPQKLYAYQSDAWQKAVFEERKISEKEQETKEEDRLMEEKKKKKQEEKKKKEAAQKKAA
EHKTKVPETTKTSQSQPQPANSSNSTSTTTVTNSSGSNGKRASTSCQQQALSRYPPREVP
PRFRHQEQKQLLKRGQPLPPGTAISNSLAQGTGQVAANSSQHSTQQTSGGPQQLQHLGKG
QTDISHSGLGNHYENSHWGQPPFRSEPNSIWDKVIIDGSDKEAWPSISGNETETASECTD
TDSASTCGSDTSSMATGSAPGNFNGQNKNCNNAGNGALVQSSSNQSAIGGGANGGNGNSS
RVWAVASGSAPGIGHCSATSASGKMDSIVSVNPNCWGTSTSTAGINLNLNPNANPAAWPV
VGQDIQGTVGGGNASTVCSSSNSIDQNLGNPNNGPTGTLNTWGNLLQQESTEIQTSTSQN
VSFSIQPQNLNTDGPNNTNPINSSPNPINAMQANGLPNVSVPGGWAMTVSMGAINPSHLQ
NLPGASGSPAVSQLNGGNSEGMNNPSCNSVWGMPHTNPTATNGNSGFSQGNGDTVNSALS
LSAKQTLANNSNSAVEKDVGSNAWDSGPPTSPGVLPWTRAGTIGGLHSGPSNNGAWGNTT
SNRNTNNGVNGEWGKPSNQHSTNEANGNGKGSCSWEALCVSSQAPVLQQSNEQINSWVKP
SESGTTGSDGSNESGGSHHEGSTGRNGGRHNGSRRKTDKGIIEQQGLVQTVVLKPDHDPR
VLCNTGWGQTPVKQNISWQIQESLRSERKSDIGTEAWGSVAAQSSNSGGRSDGSSMSSTN
TSTVSGWGNHPPTVMSNSTGWGDKVPNGQGGWGDSSNSNAAAATAKSGHAWSGVSGQEEK
PPTWVDSQKPKPQNWGEGQKSNQGWASGSGVVGGGSGGGDWTDSATGSLAEAKKNGSGWD
NENNRSAPNWSETTRSQSSGWSNGTTSKPNPSTGWGEPLKSNGPQNWGNKPQDNNVNTWG
GTASIKQSNSGWIGGPMSTKQKDSESTGWEEPSPPSIRRKIEIDDGTSAWGDPTNYKKTV
NMWDRNNPVNQSSNNTVTEQQQPPPPHQSSAAQNRSPLLAPGWGEALSVPAKTENSWGEP
PSPLTAVDNGTSAWGKPPNGSSGWGDNTVELTGNFGRGNPPAAAPAMCKPASKTMQEGWV
SGGDEISLNSSHHSNWEEDEGEMGMWNNVASQESNSSCNSSGWSNASKKVHQKSIKASSK
QEETWLMNRLIKQLTDMGFPREPAEEALKCNNLNLDQAMDGFSPFPGALLEKKVEMDKRG
MGISDYNGIVSKPLGCRPPSVSKESSVDRPTFFDKLTLSFSNQDGGLVEESPTSPFLPSP
SLKLALSNSAHPNQALGAIASGLGMQNLNSSRQSGNLGMFGNSGAAQARTMQQQQQPPVQ
PLNSSQPSLRAQVPQFLSPQVQAQLLQFAAKNMGLNPALLASPINPQHMTMLNQLYQLQL
AYQRLLFQQQMLQAQRNVSGTIRQQEQQVARTINNMQQQIQQHQRQLTQALLMKQQPSHP
PLHPSAGKVTIDNLSHHPPPSLSDLQTKEQQTSPNSFPAYSLAGLIPNMNVSNMELNAGL
SMKDPAQAQSRLRQWTHPNSLENLSSNSLSLDQNQSKHGAIPGGLNIGPTIKPSLEDSYS
PYDLITSSESPASPPVPVTDSWTRAKSPADKISNGSNINWPPEFRPGEPWKGLQNIDPET
DPNVTPGSVPSGPSINTTIRDVDRYLLRDRSGGSSPTSQNATLPSSSAWSFSASGYTSSF
SSSTSAPNPAAKLTDKSTWSPGPIAQSQAPLSHELWKVPLGSKNTRPPPGLTNTKPSPSW
GVNSLGLVSSWPSSYSSNSAWSTDSSGRNNSWLVLRNLTPQIDGSTLRTLCMQHGPLITF
HLNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTILAEFASDEEVNRFFAQGQSLSQTS
SWQSNTGTNPSRLGSSTNSHGLVRNDLGHWNTTSLSGKGTNDLLWSSVPQYSSSLWGPPN
NDDSRVMGSPTPINTLLPGDLLSGESM
NT seq
6024 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgcagaaattatatgcttatcagagtgatgcatggcaaaaagctgtctttgaa
gagaggaaaataagtgagaaagaacaagaaactaaagaagaggaccgtttgatggaagaa
aagaaaaagaaaaaacaagaagagaagaagaagaaggaagctgcgcagaaaaaggctgct
gaacataaaaccaaagtgccagaaactaccaagaccagtcaaagccagccacagcctgcc
aactcctccaacagcacttccactaccactgtcactaacagcagtggaagcaatggaaag
cgagcttctaccagttgtcagcaacaggccttgtctcgttacccaccccgtgaagtgcca
cctcgcttccggcatcaagaacagaagcagctattgaaaagagggcagccactgccacct
ggaactgccatcagcaatagtttagcacaaggtacagggcaagtggccgcaaactcttca
cagcacagcactcaacaaacgtctggtggaccacagcaactccagcatcttggtaaagga
cagactgatatcagccacagtggtttgggaaatcattatgaaaattcccactggggtcaa
cccccctttagaagtgaaccaaacagcatctgggataaagtgataatagacgggagtgac
aaagaggcttggccttccatttctggaaacgagactgaaactgcctcagaatgcacagac
actgactctgcctcaacctgtggctctgatactagtagcatggctacagggagtgcacca
ggcaacttcaatggacaaaataaaaattgcaataacgctggtaatggggcacttgtccaa
agcagttcaaaccagagtgccattggaggtggagcaaatggtggaaatggaaattcgtcc
agggtgtgggctgttgcctcaggttctgcacctggaataggtcactgctctgctaccagt
gcaagtggaaagatggacagcattgtgagtgtaaatccaaactgttggggcacttctaca
tccactgctggcattaacctgaatcttaatcccaatgccaacccagctgcttggcccgta
gttgggcaagatattcaaggaaccgtaggaggaggaaatgcttcaactgtttgcagttcc
agtaattccattgatcagaatcttggtaatcccaataatggtccgacaggtacattgaat
acctggggaaatttgctgcagcaggaaagcacagaaatacaaacatccacttcacagaat
gtgtctttcagcatacaacctcagaaccttaacactgatggaccaaataacactaacccc
ataaactcttcaccaaaccctatcaatgcaatgcaagcaaacggactgcctaatgtttct
gtaccaggaggctgggcaatgactgtaagcatgggtgcaataaacccatcccatcttcaa
aaccttcctggtgctagtgggtcacctgcagtttctcagctcaatggaggtaacagtgaa
ggaatgaacaatccttcatgtaactctgtgtggggaatgccacacactaatcctacagcc
accaatggtaactctggatttagtcaggggaatggagacactgtgaattccgcgttaagt
ttaagtgctaagcagacattagcaaacaattctaatagtgctgtagaaaaggatgttgga
agcaatgcttgggactctggccctcctaccagtcctggggtactgccttggacaagggct
ggtaccattgggggcttgcactctggtcccagtaacaatggagcttggggtaacacaaca
tccaacaggaacaccaacaacggtgtaaatggagaatggggaaaaccctcaaaccagcat
tccactaatgaagcgaatggtaatggaaaaggatcgtgttcctgggaggccctttgtgtt
agtagccaagctcctgttttgcagcaaagtaatgaacaaattaactcttgggtgaaacct
tctgaatcgggtaccactggtagtgatgggagtaatgaaagtggtggtagccatcatgaa
ggaagcactggaagaaatggaggaaggcacaatggtagtcggcgaaagactgacaaagga
ataattgaacagcaagggctggtccagactgttgtattaaaaccggatcatgaccctaga
gttttatgtaatactggatggggccagacaccagtaaaacagaacatttcttggcaaatt
caagaatctctgaggtctgagcgaaaaagtgacattggaactgaggcttggggttcagtt
gctgcccaatcttcaaactcaggagggagaagtgatgggtctagcatgagcagtactaat
acctcgacagtatccgggtggggaaatcatccaccaacagtcatgtccaatagtacagga
tggggagacaaagtacctaatggccaagggggatggggggattcttcaaattcaaatgct
gctgctgccacagccaaaagtggccatgcctggagtggggtttctggtcaggaggaaaag
ccacccacttgggtagactctcagaaacctaagcctcagaattggggtgaaggacagaaa
agtaatcaaggctgggcatcaggaagtggagtcgtagggggtggtagtggaggaggggat
tggactgattctgccacaggatcgttagctgaggcaaagaaaaatgggtctggttgggat
aatgaaaataacagatctgcacctaattggagtgagaccaccagatcgcagtctagtgga
tggagtaatggtactaccagcaagccaaacccaagtacaggctggggagagcctttaaag
tcaaatggaccacagaactggggaaataaacctcaggataataatgttaatacctgggga
ggaactgcttctataaaacagtctaattcaggttggattggtggacctatgtctacaaaa
cagaaggacagtgaatccactggctgggaagagccttctccaccatctattcgccgcaaa
atagagatagacgatggtacctcagcttggggagacccaaccaattacaagaaaacagta
aacatgtgggatagaaacaatcctgtgaatcaaagcagtaacaataccgtgactgaacag
caacaaccacctccgcctcatcagtcatctgccgcacaaaaccgctcgccgctgcttgct
cctggttggggagaagcactcagtgttcctgcgaaaactgagaactcttggggtgagcca
ccttctccattgactgcagttgataatgggacttcagcatggggcaaacctcccaatggc
agttcagggtggggagataatactgtggaattaacggggaactttggaagagggaatcct
cccgctgctgccccggcaatgtgcaaaccagcttctaaaactatgcaagaaggttgggtc
agcggtggagatgaaatttccctcaatagtagccatcattctaactgggaagaagatgag
ggagagatgggaatgtggaataatgtagcttctcaggagagcaactcttcctgtaattca
tcaggctggagcaatgctagcaagaaagtgcatcagaagagtataaaagcatccagtaag
caagaagagacttggcttatgaatcgcctgataaagcaattgactgatatgggttttcct
agagaaccagcagaagaggctctgaaatgtaataacctgaatcttgatcaggctatggat
ggattttccccttttccaggtgctctgttggaaaagaaagtggagatggacaaacgtgga
atgggaatatcagattacaatggaatcgtttctaaaccacttggctgccgaccaccttct
gtctccaaagagtcttccgtggatcgccccaccttttttgacaagctcaccctatctttc
tccaatcaggatggcggcctagtggaagagtcccctacttcaccatttttgccttcacca
agcctgaagctcgccctttcaaacagtgcacaccctaatcaggctcttggtgccattgcc
tccgggctgggcatgcaaaacttgaattcttctagacagagtggcaatctaggtatgttt
ggcaatagcggagcagcacaagccaggaccatgcagcagcaacagcagccgccagtgcaa
cctcttaactcatcccagcctagtcttcgtgctcaagtgcctcagtttctatcccctcag
gttcaagcacagctcttgcaatttgcagcaaaaaacatgggtctcaaccctgcactatta
gcctcgccaattaaccctcagcatatgactatgttaaaccaactttatcagctgcagctg
gcctaccagcgtttactcttccagcagcagatgttacaggcccagcgcaatgtttctgga
accattagacaacaagagcagcaagttgcacgtacaatcaacaacatgcagcagcagatc
caacaacaccagcggcagctgacccaggccttgcttatgaaacagcagccatcacatcca
ccattgcacccatctgcaggcaaagtaaccattgataatctgagtcatcatccacctccc
agcctttcagacctgcagaccaaagagcaacaaacttcacccaattctttccctgcatat
tccttggctggattgatcccaaatatgaatgtaagcaacatggaactaaatgctggttta
tccatgaaggatccggctcaagcccaatctcgattgaggcagtggacccaccccaactct
cttgaaaatttaagcagcaattctttatcgttggatcagaaccagagcaagcatggtgct
atccctggaggtctcaatattggtccaacaatcaagccctcccttgaggactcctacagt
ccatatgatctgataaccagcagtgagtcaccagccagtccaccggtaccagtcactgat
agctggacacgtgccaaatcccctgccgataagatctcaaatggctccaacattaactgg
ccaccagagtttcggcccggggaaccctggaaaggacttcagaatatcgaccctgagact
gaccctaatgttacacccggaagtgtcccaagtggaccttccatcaatactactatccgg
gatgtggatcgctatctgctcagggacaggagtggagggtcatccccaacatctcagaac
gccacgctgccttcatctagtgcctggtccttcagtgcctctggctacactagctctttc
agcagctctacatctgcacctaatcctgcagctaaactgacagataaatctacttggtca
cctggacccattgctcaaagtcaagcaccactgtcacatgaattgtggaaagtgccgcta
ggatccaaaaacactaggccaccaccaggtctgacaaataccaagccatcaccatcctgg
ggtgtcaattcgctcggacttgtctcgagctggccaagctcttactcctccaattctgct
tggagcactgatagctctggaagaaataatagctggctggttctgcgaaatctaacaccc
cagattgatggctccactttgcggactttatgcatgcagcatggtccattgataacattc
catctgaacctaacccaaggaaatgctgtggttcgctacagctctaaggaagaagcagct
aaagcccagaagtctctccacatgtgtgttctgggaaacactactatcctcgctgaattt
gccagtgatgaggaagtaaaccgtttctttgcacaaggtcaatcgctctctcagacctcc
agttggcagtctaacacaggaacaaatccgagccgacttgggtcaagcaccaactctcac
ggattggttcgcaacgatctaggccactggaatactacaagcttgagtgggaaaggaacc
aatgacctcctctggagtagtgtccctcagtactccagcagtctatggggtcctcctaac
aatgacgacagcagagtaatgggcagccctacacctataaacaccttactccctggtgac
ctactcagtggagaatcaatgtag
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