Leucoraja erinaceus (little skate): 129709028
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Entry
129709028 CDS
T09122
Name
(RefSeq) type III intermediate filament-like
KO
K07606
vimentin
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
129709028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
leri03019
]
129709028
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
leri04812
]
129709028
04147 Exosome [BR:
leri04147
]
129709028
Messenger RNA biogenesis [BR:
leri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Factors that have mRNA localization signals
129709028
Cytoskeleton proteins [BR:
leri04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type III
129709028
Exosome [BR:
leri04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
129709028
Exosomal proteins of other cancer cells
129709028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Filament
Filament_head
TPR_MLP1_2
HAM1_C
TolA_bind_tri
DUF1664
Laminin_II
Motif
Other DBs
NCBI-GeneID:
129709028
NCBI-ProteinID:
XP_055511120
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All DBs
Position
2:complement(39110545..39124775)
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AA seq
452 aa
AA seq
DB search
MSHQSVYRRMFAEKPMRSSVTRRSYTGRPNAGSGMIIPSSSRSNYSMRPVQSRTVRTVRS
SAPSVAMGSNALNFSLVDALNSEFKVNRNNEKAEMIQLNDRLASFLDKVRGLEQQNKMLL
AELEQLKGKRPSKIGDMYEQELRELRLLIDQISNDKSRVEMERDNLSDDLQKLREKFQDE
VIQREDAENNLAAFRQDVDDACLARLDLERKVETLQEEIMFLKKLHEEEILELQAQIRDS
SVKIEMDVVRPDLTAALHEVRSQFDKLANKNIAETEEWYKSKLADINDTASRNTDALRMA
KQENNDYRRQVQTLTCEIDAMKGTNESLERQMQELEERYSMDLNNSQDTVAQLEDDIGNL
KDEMARHLQEYQELLTIKMALDIEIATYRKLLEGEESRISMPLPSFGSLSLADAMYEQQP
FENRTSKKKIVIKTVETSGGDIISETTQKIED
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatcaaagtgtctaccgcaggatgtttgcagaaaaacccatgagaagttcggtg
acccgtcgctcctatacgggtcgaccgaatgcggggtccggcatgatcatcccttcgtcc
tccagatctaattactcgatgaggccggtccagtctcgaaccgtcaggaccgtcaggagc
agtgctccatccgtggctatggggagcaatgctctgaacttttccttagtggatgccttg
aattcggagttcaaggtgaaccgcaacaatgagaaagctgagatgattcagctgaacgac
cgcctggccagcttcctggataaggtgaggggcctggagcagcagaacaagatgctcctg
gccgaactggagcaactgaaggggaagcgcccatccaagatcggagacatgtatgaacag
gagttgagggagttgcgtctcctgatcgaccagatcagcaacgacaagtcccgcgtcgag
atggaaagggataacctgtccgatgatcttcagaagttgagagagaagtttcaagatgaa
gttattcagcgcgaagatgcggaaaataacctggcagctttcagacaggatgttgatgat
gcctgcttggcgcgcttggatttggagcgtaaagtggagacactacaagaagaaattatg
ttcctgaagaaacttcatgaagaagaaattctagaactgcaagctcaaatccgagattcg
agcgtcaagattgagatggatgtggtcagacctgatttgactgcagcactccatgaagtg
cgttctcagtttgataaacttgctaataagaacattgctgagactgaggaatggtataaa
tccaagctggctgacataaatgatactgcttctcgcaacactgatgctctccgcatggca
aaacaagaaaataatgattaccgcagacaagtccagacactgacctgtgaaattgatgca
atgaagggaacgaatgaatcccttgagcgccagatgcaggaactggaagaacggtatagc
atggatctcaataatagccaggacaccgttgcccagctcgaggatgatatcggtaatttg
aaggatgagatggctcgtcatttgcaagaatatcaggagctattgacgattaagatggct
cttgatattgagattgccacatacaggaaattgctggaaggggaagaaagcaggatttca
atgcctttgccctcattcggatctctgagccttgccgatgccatgtatgaacagcagcca
tttgaaaatcgcacatcaaagaagaaaattgtcattaagactgttgagaccagtggtgga
gatataatcagtgaaactacccagaaaattgaagactga
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