Leucoraja erinaceus (little skate): 129709339
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Entry
129709339 CDS
T09122
Symbol
ddx54
Name
(RefSeq) ATP-dependent RNA helicase DDX54
KO
K14808
ATP-dependent RNA helicase DDX54/DBP10 [EC:
5.6.2.7
]
Organism
leri
Leucoraja erinaceus (little skate)
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
leri03009
]
129709339 (ddx54)
Enzymes [BR:
leri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129709339 (ddx54)
Ribosome biogenesis [BR:
leri03009
]
Eukaryotic type
Pre-60S particles
Helicases
129709339 (ddx54)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DBP10CT
ResIII
KH_SLS1_1
Motif
Other DBs
NCBI-GeneID:
129709339
NCBI-ProteinID:
XP_055511606
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All DBs
Position
25:8972991..9005331
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AA seq
870 aa
AA seq
DB search
MAQKKKQKKQKQQQKQQRPLKSRPRNARQRSQKSRWDVEVESDGGEFDLVPSMVDDAPVV
NKHNIKSLPSFPSADCPSDVEPDTREMVREQNKKKKKSGGFQSMGLSFPVFKGIMKKGYK
VPTPIQRKAIPVILDGKDVVAMARTGSGKTAAFLIPLFEQLKVHHSQTGARALILTPTRE
LALQTMKFTKELGKFAGFKTALILGGDKMEDQFAALHENPDIIIGTPGRLMHVVVEMNLK
LHKVEYVVFDEADRLFEMGFAEHLQEIIQRLPESRQTLLFSATLPKQLVEFARAGLTEPV
LIRLDVDTKLNDQLRLAFFHVRSDDKSSVLLYLLRNVIKPQEQTVVFVATKHHVEYIKEM
ITRQGIECSYIYSALDQTARKINIGKFVHRKCMVMIVTDVAARGIDIPMLDNVINYNFPS
KAKLFLHRVGRVARAGRSGTSYSLVALDEIPYVFDLHLFLGRPLKFASQNENPEDTDGLY
GRVPQSIIDDEESLLIADYKASLDLQNMKRVSENAYAQYLKSRPTPSPESIKRVREMNFV
TLGIHSLFGVSLEDPELQRLKVIDNIKNYKAKSTIFEVNSTNKSPAGETMRMTRNKQRHS
IHKFQQSRQEKEASASKNVPKPVEADPSTREDADDDNIEIVFSEVMGRKRKNKESSDPVS
QTKKGCCKDDQFYIPYQPKDFNSERGLSLSGEGTTFEQQASGAVLDLMGDEAENMQKQKQ
LLKWDRKKKRFIRDTGKQSKKIKTESGRYINASYKKNIYEEWKKKYKIDERLSDDEAENE
HGNHRGNKRGHGGRGNPRSFSRKPSQQLGVKSELKSKTEILKERKRMEKNKFLQRGGMKK
LKHRNRHRVREMQSMAFGRGRGKGKMRKKM
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagaagaagaagcagaagaaacagaagcagcagcaaaaacaacaacgtccgctc
aagtccaggcccaggaatgcgcggcaacgctcgcagaaaagccggtgggacgtggaggtc
gagagcgatggcggcgagttcgatttggtcccttccatggtggacgatgcgccggtggtg
aacaagcacaacatcaaatctttaccaagctttccttcagctgattgcccatctgatgtg
gaacctgacaccagagagatggttcgggaacagaataaaaagaagaagaagtcaggaggt
ttccagtctatgggtttaagctttccagtcttcaaaggcataatgaagaaaggctataaa
gtaccaactccaattcagagaaaggcaatcccagtgatactggatggcaaggatgttgtt
gccatggccaggacgggcagcggtaaaactgcagcttttctcattcctttgtttgagcag
ctgaaagtgcatcattcccagacaggtgctagagctttaattcttaccccaacgagagag
cttgcattacaaaccatgaagttcacaaaagagcttgggaagtttgctggcttcaaaaca
gctttaatcttgggcggagataaaatggaagatcagtttgcagcacttcatgaaaatcct
gatataataattggcacaccgggtcgattaatgcatgtggttgtggaaatgaacctcaag
ctgcataaagtggaatacgtggtctttgatgaagctgacagattgtttgagatgggattt
gctgagcacttgcaagagattatccaaaggttaccagaatccagacagactttgctattc
tcagccacattgcccaagcaattggtggaatttgcacgtgctggtttgacagagccagtt
ctcatccgattggatgtagacactaaactgaatgatcagttacggctggcattttttcac
gtaagatctgatgacaagtcatctgttttgctctacttgttaagaaatgttatcaaacct
caagaacagaccgttgtttttgtagctaccaaacatcacgtggaatacataaaagagatg
attaccaggcagggcattgaatgttcatacatctacagtgctctggatcaaacggcaaga
aaaatcaacattgggaagtttgtccacagaaaatgtatggtgatgatcgtaacagatgtt
gcagctcgtggtattgatattcccatgttggataatgtcatcaattacaacttcccatcc
aaagctaaacttttcttgcacagagtcggtcgagttgcgagagctggtagaagtggcaca
tcttattcattggtagctttggatgaaattccatatgtttttgatctacatttgttcctt
ggacggcccctcaaatttgcgagccagaatgagaatcccgaagatacagatggactatat
ggcagagtccctcagagtattattgatgatgaagaatcattacttatagcagattataaa
gcttcactagatcttcagaacatgaaaagagtgtcagagaatgcttatgctcagtatctg
aaatcaagacccactccttcccctgaatcaataaagagagttagagaaatgaactttgtg
acactgggcattcattcattatttggtgttagcttggaagatccagaacttcaaagactc
aaagttatcgacaatatcaaaaattataaagcaaaatctaccattttcgaagtaaactct
acaaacaagagccctgcaggtgagaccatgcgaatgacacgaaataagcagcgacactca
atccacaaatttcaacagtcaaggcaagaaaaggaagcaagtgcgtccaagaatgtgccc
aaaccagtggaagcagatccttctactagggaggatgctgacgatgacaacattgagatt
gtgttctctgaagttatggggaggaagaggaaaaataaggaatcctccgatcctgtatcc
caaacgaagaaagggtgttgcaaggatgatcaattctacattccttatcaaccaaaagac
ttcaattctgaaagaggattaagcttaagtggggaaggtaccacctttgagcagcaggca
tctggtgcggtgttagacttgatgggagatgaagcagaaaatatgcaaaaacagaaacaa
ctgctaaaatgggaccgcaaaaaaaagcgattcatcagggacaccggcaaacaaagtaag
aagataaagacagaaagtggaagatacatcaatgcttcatacaaaaagaacatctatgaa
gaatggaagaagaaatacaagatcgatgaaagattatctgacgatgaagctgaaaatgag
catgggaaccacaggggcaataaaagaggccatggtggaagaggaaacccgcgatccttc
tcaagaaaaccaagtcaacaacttggagtaaaatcagaacttaaatccaaaactgaaatt
cttaaagaaaggaagagaatggaaaaaaataaattcctgcaacgtggaggaatgaaaaag
ctcaagcacaggaaccggcatcgtgtgagggaaatgcagagcatggccttcggtagaggc
agaggcaaagggaaaatgaggaaaaaaatgtaa
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