Leucoraja erinaceus (little skate): 129709480
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Entry
129709480 CDS
T09122
Symbol
pole
Name
(RefSeq) LOW QUALITY PROTEIN: DNA polymerase epsilon catalytic subunit A
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri03030
DNA replication
leri03410
Base excision repair
leri03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
129709480 (pole)
03410 Base excision repair
129709480 (pole)
03420 Nucleotide excision repair
129709480 (pole)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
leri03032
]
129709480 (pole)
03400 DNA repair and recombination proteins [BR:
leri03400
]
129709480 (pole)
Enzymes [BR:
leri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
129709480 (pole)
DNA replication proteins [BR:
leri03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
129709480 (pole)
DNA repair and recombination proteins [BR:
leri03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
129709480 (pole)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1744
POL2_thumb
DNA_pol_B_exo1
zf_DPOE_2
zf-DPOE
DNA_pol_B
DNA_pol_B_exo2
RNase_H_2
APP_N
CTNNB1_binding
Pam3_Gp34
KRTAP
TrAA12
Motif
Other DBs
NCBI-GeneID:
129709480
NCBI-ProteinID:
XP_055511876
LinkDB
All DBs
Position
25:19127563..19222259
Genome browser
AA seq
2323 aa
AA seq
DB search
MVLRYSGNRRRWPERSEQGSGFXQGSGSGFGSGSGFGSGSGFGSGSGFGSGSGFASGSSA
HHSDDGSALSALKRLERSQWTDEMDARFGFERLKDPGEKTGWLINMHPAEILDEDKRMIS
VVDYYFVEEDGNRFKVALPFQPYFYVATKKGCEREVSSFLSKKFQGKLSKITTIPKEDLD
LPNHLVGLKRLYIKLAFNTVDDLLKVRKEISPSVRKNKEREKSNDAYTVMLSSALAGGNV
TEVEETSKKISDQMENIIDIREYDVPYHVRVSIDLKIQVAHWYNIRIRGGIYPPEIVRRD
DLVERPDPVVLAFDIETTKLPLKFPDAENDQIMMISYMIDGQGYLITNREIVSEDIEDFE
FTPKPEYEGPFCVFNEPDEASLIRRWFDHVQESKPNIFVTYNGDSFDWPFVETRAAVHGL
NMYQEIGFQKDSQGEFKASQSIHMDCYRWVKRDSYLPVGSQNLKAAAKAKLGYDPVELDP
EEMCRMATEEPQTLATYSVSDAVATYYMYMKYVHPFIFALCTIIPMEPDEVLRKGSGTLC
EALLMVQAFHANIIFPNKQEQVFNKLTNDGHVLDSETYVGGHVEALESGVFRSDIPCRFK
MNPSAFDFLLQRVECTMQHAIEEEEKLPMEQITNFQEVCDEIKKKLNCLKEVPNRIECPL
IYHLDVAAMYPNIILTNRLQPSAMVDEATCAACDFNKPGANCQRKMAWTWRGEFMPASRS
EYHRIQQQLESEKFPSTFPNEKPKAFHELSREDQAKYEKKRLADYCRKAYKKIRITRTEE
RVTTICQRENSFYVDTVRAFRDRRYEFKGSHKVWKKKLAAAIECGDATEIKRCKNMEILY
ESLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCHTGANIIMQARELIEQIGRPLELDT
DGIWCVLPNSFPENFVIKSNNPKKPKVTISYPGAMLNILVKERFTNEQYQELMDPATLTY
ETRSENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVFNEDGSLAELKGFEVKRRGELQL
IKIFQSSVFEAFLKGTTLEEVYASVAKVADYWLDVLYSKAANMPDTELFELISENRSMSR
KLEDYGEQKSTSISTAKRLAEFLGDQMVKDAGLSCRFIISRKPEGSPVTDRAIPLAIFQA
EPSVRKHYLRKWLKSPSLQDLDIRLILDWDYYIERLGNAIQKIITIPAALQQVKNPVPRV
RHPDWLHKKLLEKNDVYKQKKINELFTNTGVRQVTSNLRTTSDQHSEICDLEDLRTPKQG
VQPVIPISTKRTRGNESQEASQDLELTQSWREILGPPPPLGESKNERLVWLRYQKKKWEL
QAKQRKARHKRRKLNDGAAALGRPIRDGPANSLSSFLRRTARTILDMPWQIVQIAETSQP
GLFKLWAIVGNDLHCIKLNIPRVFYVNQRIPKTEDSTVYKKVNRILPRSNIIYNLYEYSV
PEDMYQAHINEINADLSAPDVEGVYETQVPLLFRALVQLGCVCVVNKQLSLHLAGREADT
FELEYLEMCSLAQFNYLEPGSVRHIYLYHNAQGSKALFGLFIPSQRKASVFVLDTVRSNQ
MPNLSNLYAAERTAMLEKLDEGLLPPDKHTFEVQAEKDSKLIYRAIQRLLLSYKDEKRGP
TLIAVQSKWDLKRLINGMPILDDFPLVPVNVIDDISYGILDWQRHGVRRMIKHYLNLDSI
LSKAFEMARYYHIPIGNLPDDISTFGSDLFFSRHLRRHNHLLWLSPTSRPDLGGKEADDN
RLVMEFDERSTVEINNPGCYSTVSVELDIQSLAVNTILQSHHINDMEGASSTGVSFDVIQ
QASLEEMMAGNQAANALASYDETALCSHTFRILKSMVVGWVKEITHYQNMYADNQVMHFY
RWLRSPSSLLYDPALHRTLHNMMKKLFLQLVAEFKRLGSSVIYANFNHIMLCTKKRRLED
SIGYLEYITKSIHSREIFHSLSISFSRCWEFMLWMDPANYGGIKGKLPSGSHVGEAESNK
EAEERVGDEDSDNDIEEVHLEDEEGNTDVEDRLDNNWNIMQYLPQAASCQSYFLMIVSAY
IVAVYHSMKEELRRNAPGCTPMKQRGVSQISQDPAGESGTLAGLITFSQEYVSNELTQNF
FTITQKIQKKVSSNRHTTESSDIFPVLPGSYLPFNNPALEFIKSVCKILSLDSSITNQVN
KLKRDLLRLIDVGEFSEEAQFKDPCRSYIVPEIICRNCNFCRDLDLCKDPSISQDGTVLP
KWCCTNCQVAYESEAIEMALVEALKKKMMAYTLQDLVCSKCKGVKEANMPIYCSCARDFE
LTLSVKGFMEQIQVFRNIATHYSMPFLTETVDWMFRMNAHLKS
NT seq
6972 nt
NT seq
+upstream
nt +downstream
nt
atggttctgcggtacagcgggaaccggcggcggtggccggagcggtcggagcagggctcg
ggctttnngcagggctcaggctcgggctttggctcaggctcgggctttggctcaggctct
ggttttggctcgggctctggttttggttccggctccggctttgcctctggctcgtcagcg
catcacagtgacgatggctctgccctttctgcactcaagcgcctggagcgcagtcagtgg
acagatgagatggatgcacggtttggatttgaacgtctcaaagatccaggagagaaaacg
ggctggctgatcaacatgcacccagctgaaatcctggatgaagacaaaagaatgatcagt
gtagtggattattattttgttgaggaggatggaaacaggtttaaggttgctctgcctttc
caaccttacttctatgttgccacaaaaaaggggtgtgagcgagaagtttcgtcattcttg
tccaagaaatttcaaggcaaattaagtaagataacaaccattccgaaagaagacttggat
ttgcctaaccacctcgttggcttgaaaagactctacattaagcttgcctttaacacggtt
gatgatctgctaaaggttcggaaggaaatttctccatccgtgaggaaaaacaaagagagg
gagaaatccaatgatgcctatacagttatgttgtccagtgccttggccggaggtaatgtg
acagaagtggaagaaacgtcaaaaaaaatctctgatcaaatggaaaacattattgacatt
cgcgaatacgatgtaccttatcatgtccgagtatccattgatctgaagattcaagtggca
cattggtacaacattcgaatccgtggtggcatttatcctcctgaaattgtgcgtagggat
gacttagttgaacgaccagatcctgttgttttggcttttgatattgaaaccacaaaacta
ccattaaaatttccagatgctgaaaatgatcagatcatgatgatttcctacatgattgat
ggacagggctatttgattacaaacagagaaattgtatctgaagatattgaggattttgag
ttcacaccaaaaccagaatatgagggtcccttttgtgtgtttaatgagccagatgaagca
agcctaattcggagatggtttgatcacgtccaagagagtaaacctaacatatttgtgaca
tataatggtgactcttttgattggccttttgttgagacacgagcagcggtgcatggattg
aacatgtaccaagagattggctttcagaaggatagtcagggtgaattcaaagccagccaa
agcattcacatggactgctacagatgggtgaaacgagacagttacctgcctgtgggtagt
cagaacttgaaggctgcagccaaggctaaacttggatatgaccctgtggagttggatcca
gaggaaatgtgtcgaatggcaactgaggagccccagacattagctacttactcagtgtcc
gatgctgtcgctacttattacatgtacatgaaatacgtacatcctttcatttttgctttg
tgcacaatcattcctatggaacctgatgaggtgttaagaaaggggtctggaacactttgt
gaagcattgcttatggtccaggcctttcacgccaacatcatcttcccaaacaaacaggaa
caggtctttaataagctgacaaatgatggtcatgttcttgactcggagacatatgtggga
ggacacgttgaggctttggaatcaggagtttttcgcagtgacataccatgccgatttaaa
atgaatccatcggcctttgactttctgctgcagagagtggagtgcacgatgcaacatgcc
atcgaggaggaagagaagcttccaatggagcagatcaccaacttccaagaggtatgcgat
gagattaaaaagaaactgaactgtttgaaagaagttcccaacaggattgaatgtcccctc
atttaccacttggatgttgcagcaatgtatccaaacatcattctgaccaaccgcttgcag
ccatctgccatggtggatgaagctacctgtgcagcctgtgatttcaacaaacctggtgca
aactgccagcgcaagatggcctggacttggagaggagaattcatgcctgcctcacgcagt
gagtaccatcgtattcagcagcaacttgaatctgaaaagtttccttccactttcccaaat
gagaagccaaaagctttccatgagctgtcccgtgaagatcaggcaaagtatgaaaaaaag
agacttgcagactattgccgcaaagcttacaagaaaattcgtatcactagaacggaggaa
cgagtaactacaatttgccagcgtgaaaattcgttttacgtagatacagtgcgagctttc
cgcgacaggcggtatgaatttaagggttcacataaggtgtggaagaagaagttggctgct
gccattgagtgtggagatgcgacagaaatcaagcgttgtaagaacatggagatcttgtat
gagtctctgcagctggcacacaaatgtattctaaactccttctatggctatgtcatgcgt
aaaggggctcgttggtattccatggaaatggctgggatcgtctgtcacaccggtgctaat
attatcatgcaggccagagaactgattgagcagattgggcgacccttggagctggacact
gatggcatttggtgtgtcctccctaactcattccctgagaattttgtcatcaagtcaaac
aatcccaaaaagccaaaagtgacaatttcctacccaggtgctatgctaaatattctggtg
aaggagagattcacaaatgaacaataccaagagctgatggaccctgcaacactgacctat
gaaactcgatcggaaaacagcattttttttgaagtggatggtccttatctggctatgatt
ctgccagcttccaaagaggaaggaaaaaaactcaagaaaagatatgcagtatttaatgag
gatggctcactagcagaactcaaaggttttgaagtgaagcgtcgaggagaattacagctc
atcaagatttttcagtcttctgtgtttgaggcctttctgaaaggcactaccttggaggaa
gtgtatgcatctgttgccaaagtagcagattactggctggatgtattgtacagcaaggca
gcaaacatgcctgacacagagttatttgaactgatctctgagaatcgatcaatgtctcgt
aaattggaagattatggtgaacagaagtccacctcaatcagcactgccaaacggcttgca
gaatttcttggggatcaaatggtgaaagatgcaggactgagttgtcgctttatcatctcc
aggaagccagaaggatctccagtaactgacagagcaatcccattggccattttccaggcg
gagccaagtgtaagaaagcactatctgaggaaatggttgaagagtccctctttgcaggac
ctggacatacgattaattctggattgggattattacattgaacgtcttggcaatgcaatt
cagaaaattatcaccatcccagccgctcttcagcaggtgaaaaatcccgttccacgagta
cgacaccccgattggcttcataagaaattgctggaaaaaaatgatgtttacaaacaaaag
aaaatcaatgagctgttcacaaacactggagtcaggcaggtgacatccaatctgcgtaca
acaagcgatcagcattcggagatttgtgatctggaagacttaagaacaccgaagcaagga
gtacaaccggttatccccatcagtacaaagagaacacgtgggaatgagagtcaggaagca
tcccaagacctggaattaacccagtcttggagagagatattgggacctccaccaccacta
ggagaatcaaagaatgaacggttagtgtggttgaggtaccagaagaaaaaatgggaactc
caggcaaaacagagaaaagcccgccacaagagaaggaagctgaatgacggggcagctgca
ctagggaggcccattcgagacggtccagcaaatagcctcagcagctttctacgtcggact
gcccgcaccattttagatatgccatggcagattgtacagattgcagaaacaagtcaacct
ggcctcttcaagctatgggctattgttggtaatgatttgcattgcatcaaactcaacatc
ccacgagttttttatgtaaatcagcggattcctaaaactgaggacagcactgtatacaaa
aaagtcaatcgtatccttccacgttccaatattatttacaacctttatgaatattctgtg
ccagaagacatgtaccaggcacacatcaatgagatcaatgctgacctctctgctccagat
gtcgagggcgtctatgaaacacaggttcctctcctctttcgtgctcttgtccagcttgga
tgtgtttgtgtggtcaataaacaattatcactccatttagcaggacgagaagcagatacc
tttgagttggaatatctggaaatgtgttcattagcacaatttaattatctggagccaggg
agtgttcgacacatttacttatatcacaatgctcagggaagtaaggctctctttggactg
ttcataccttctcagagaaaggcttccgtatttgttcttgacactgtacgtagtaatcag
atgccaaatctgagcaacctttatgctgctgagaggactgccatgctggagaaattggat
gaaggactactgccacctgataaacacacatttgaagttcaagcagaaaaggattcaaag
ctaatttacagagcaattcagcggcttctcctgagctacaaggatgaaaaaagaggtcca
actctcatagctgtgcaatcaaagtgggacctgaaaaggttgatcaatggaatgccaatt
ctggatgacttcccgttggtgccagttaatgtaattgatgacataagctacggtatatta
gattggcagcgccatggtgtgcgtaggatgattaaacactacctcaatctggatagcatt
ttgtcaaaggcgtttgaaatggccagatattaccacattcccattggaaatctcccagac
gacatctctacctttggatcagacctcttcttttccagacatcttcgacgacacaaccat
ctgttgtggctttccccaacatcccgacctgatctaggaggaaaagaagcagatgataat
cgtttggtgatggaatttgatgagagatcaacagttgagattaacaatccagggtgttac
tctacagtttccgttgaattggatattcagagtttggcggtgaatacgatccttcagtcc
catcacatcaatgatatggaaggagcatccagcacaggtgtcagctttgatgttatccag
caggcatcgcttgaggaaatgatggctggtaaccaagcagctaatgcgttagcaagttat
gatgagacagcattgtgctcacacactttcaggattttgaaaagtatggttgttgggtgg
gtgaaagagatcacccactatcagaacatgtacgctgataaccaagtgatgcacttttat
cgttggctgcgttctccctcttcactgctgtatgatcctgcattacatcgcactctccac
aacatgatgaagaagttgtttctacagctggtagcagaatttaaaagactgggttcatct
gtgatctatgccaatttcaatcatataatgctgtgcaccaagaagcggcgccttgaggat
tcaataggatacctggaatatatcactaaaagcattcattcccgcgagatttttcattcc
ctctccatctcgttttctcgctgttgggagttcatgctttggatggacccagccaattat
ggaggcattaagggaaaacttccatctggcagtcacgttggagaggctgagagtaataaa
gaggcagaggaacgtgttggtgatgaagacagtgacaatgatattgaggaggttcatttg
gaggatgaagaaggcaataccgatgtagaagaccgattagacaataactggaatatcatg
caatatttgccacaggctgcttcatgccagagttatttcctcatgattgtctcagcttat
attgtagcagtgtaccacagcatgaaagaagagctgaggcgcaatgctcctggatgtact
cccatgaagcagcgaggagtcagccagatctcacaagacccagcaggagaatctggtact
ttagcaggattaattaccttctctcaagaatacgtatccaatgagctcacacaaaacttc
ttcactattactcagaagattcagaagaaggtgagcagcaatagacacaccactgaatct
tctgacattttcccagttttgccaggctcctatcttcccttcaacaacccagctctggaa
ttcatcaaatcagtctgcaagattttatctctggattcaagcataaccaatcaggttaac
aaattgaaacgggatcttctgcgtctgattgatgtgggggagttctctgaagaagcccag
tttaaagacccttgtcggtcctacatagtgcccgagattatctgcagaaattgtaatttt
tgccgcgatctggatctctgcaaagacccttccatctcacaggacggtacagtattaccc
aagtggtgttgcacgaattgccaggttgcctatgagtcggaagctatagaaatggcattg
gttgaagcattaaaaaagaaaatgatggcctatacacttcaggatttggtttgttcaaaa
tgcaaaggcgtcaaagaagctaacatgcctatctactgtagttgtgcccgggactttgaa
ttaactctttctgtgaagggatttatggagcaaatccaggtatttaggaatattgccaca
cattacagcatgcccttcctgacggagactgttgattggatgtttaggatgaatgcacac
ttgaagtcatga
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integrated database retrieval system
