Leucoraja erinacea (little skate): 129709655
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Entry
129709655 CDS
T09122
Symbol
col16a1
Name
(RefSeq) collagen alpha-1(XVI) chain
KO
K24339
collagen type XVI alpha
Organism
leri
Leucoraja erinacea (little skate)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
129709655
NCBI-ProteinID:
XP_055512114
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All DBs
Position
26:complement(10065239..10196888)
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AA seq
1563 aa
AA seq
DB search
MWTLWFAVLWASVTAEQSSTEVLARGRDVPCPRVHHDGWKSRHQEQFVNVSGFNLLRRFS
LFKTPALKKIRSPTGSLIVRLGNVSLVRATDQVFPKGLPTDFTFLATLLMKKRTLKESWY
LVKITDSQGRTQFSIGVDGRNKTVEFQAQGRFQEQLRWVFSGQGVAALFDRRWHKLVVRI
QDSVASLYLDCRLIEMKLVEERGEIDTEGQAAMGLLAENHQPAEVDLQQMILFCDPFEAE
KMTCCEIPGVRCAVDVQGPKSRRDAQRLHDGTLTGALPQIQGEVETKCFCGDQKTKSKCK
SCIPEIAGKNDASELLRAKTEKGQKGEPGIPGLSGTPGRDGKPGEKCIIGPKGTKGDPGA
VGPEGLAGESGSPGLPGTPGVGIPGKPGKPGGSPRSKGDSGEPGLPGPKGEKGDQCGLCP
TEAEEEQAAENPKAPQKTGFRPSELSRCATPGPPGLQGRKGESGEHGLKGEKGDACEFCP
QLPEELGGIVGIPGPPGPKGDRGPPGLGSPGPSGMSGTVGPLGLKGEKGSIGKQGPAGKS
GKRGTQGLPGHEGGKGSTGERGDRGIAGDQGVKGEKGEGCGACFTSTSGQQTAASPEQGT
PGAGPTDQQQGPRGEAGNQGEPGPKGDSGDPGAAGTPGTPGKPGLRGFHGLKGEKGDQCA
ICPTIPEGFKDVIGLPGRPGPRGDAGPPGTGKPGKHGLPGLPGVAGSQGDKGEKGQRGPS
GLGQPGKSGKDGTAGRPGEVGEAGVPGTPGSDGPKGSKGQAGEHGIPGHPGEPGVGIPGA
QGKDGEPGVPGLPGKRGFPGATGLTGEKGAAAEPCVCVPTQQGEWRPPGDSVDHGLPGAQ
GERTTWTNGPLGPPGPPGPPGPPGVPGPPGAVGGIGRQGIPGNDGLPGVPGLPGEVPPLS
LFAGRNNSFFKQAFCGNCTNGLPGAQAYTGAKVEHTSHGTPGASAIDHCEKCKQNQRELP
RTEEERPNDRHYGYPGTPGMPGMPGEAGLKGEQGPPGPRGYSGSQGQAGPPGFPGAPGTP
GTAGLPGDRGLNGEPGPKGEKGPSGLSGYPGGAGIPGLPGLKGERGPVGPGGETGVSGVP
GIPGAQGPSGSAGSKGDLGPPGPRGEKGDQGFQGQPGFPGQQGPIGFPGKSGSPGPPGAS
GEKGSEGRTGLVGPTGPQGRSGPPGIPGPSGVQGLDGKDGKPGARGEVGPHGPPGIRGGH
GFKGKPGLPGLPGMRGEGGPTGPPGVTGRPGFEGEPGPPGPAGPPGLPGHMGTAGTPGSP
GPVGPPGMGAKGERGAMGERGLLGLAGMPGSPGAPGIMGEPGEDGPAGKEGQPGAAGTAG
QPGPKGDPGRAGEKGAQGQRGLPGISMGGLGKSSGMALPGQPGAPGARGERGHPGTPGPA
GTPGIPGTPGAGAEAINFDEIKRLIRQEVTKIFDERMTYYLASMRSSDTSPGRPGTPGKI
GAPGHPGQPGQSGMPGQMGRDGRPGIPGSKGPSGPKGDRGDKGVGHVGEPGLPGPQGPPG
LPGYGKLGSPGPVGQQGIPGIPGQPGNQGSTGKDGRCLPSQCAMQMPEPYNAKNSKGPSS
WMN
NT seq
4692 nt
NT seq
+upstream
nt +downstream
nt
atgtggacactttggtttgccgtcctgtgggcgtctgtcacagcggagcagtcgagcacg
gaggtgctggcaaggggcagagatgttccgtgcccacgtgtccaccacgatggatggaaa
tcgcgacaccaggagcaatttgttaacgtttcaggctttaatttactcaggagattctct
ctctttaagacgccagcactgaagaaaatccgaagtccgaccggatcgttgattgtgaga
ttaggaaatgtgtccctggtcagagccacggaccaggtgttccccaaggggctgcccacg
gacttcaccttcttggccacgctgctgatgaagaagaggacactgaaggagagctggtac
ctggtgaaaatcaccgactcccagggccgaacgcagttttcgatcggtgtcgacgggagg
aacaagacggtggagttccaggcccagggccggttccaagaacagttgcgctgggtgttc
agtggccagggcgtggctgccctctttgatcgccgctggcacaagctggtggtcagaata
caggacagcgtggcctctctctacctcgactgccgactcatcgagatgaaattggtggag
gagcgcggcgaaatcgacacggagggccaggcggcgatgggtctactcgccgagaaccac
cagccggctgaggttgacctgcagcagatgatcctgttctgcgaccctttcgaggccgag
aagatgacgtgctgcgagataccgggcgtccggtgtgcggtggatgtgcaggggccaaag
agcaggcgggatgcccagcggctccatgatgggacgttgacaggagccctgcctcagata
cagggggaggtcgagaccaagtgcttctgcggcgaccagaagacaaagtcaaagtgcaag
tcctgcatccccgagatagctggaaaaaatgatgccagtgaactgctcagagcaaagact
gagaaaggtcagaaaggtgaaccgggaatccctggactgagtggtaccccgggcagagat
ggaaagccaggagagaagtgcatcattgggccgaagggcactaagggggatccgggagcc
gtgggaccagagggccttgccggagagtcgggatcaccgggactaccgggaactccaggg
gtaggaattccaggaaaaccgggaaaaccgggaggttcacccagatcaaagggagactcg
ggtgaaccgggactgcctgggccaaagggagagaagggagaccagtgtgggctttgtccc
acagaagcagaggaagaacaggctgcggaaaatccaaaagcacctcagaaaacaggcttc
aggccatctgagttgtcgagatgtgccacacctggacccccaggattgcagggtagaaag
ggtgaatctggagagcacggtctgaagggagagaagggtgacgcctgcgaattctgtcct
caactacccgaggagctgggaggaattgtgggaatccctggaccaccaggacccaaaggt
gaccgaggtcccccagggcttgggtcacccggaccctctggcatgtctggaactgtggga
ccactcgggttaaaaggagaaaagggaagcatcggcaaacagggcccggcggggaagtca
ggcaagcgaggaactcagggccttccaggacacgagggcgggaagggaagcacgggggag
cgtggagaccgagggatagcaggagaccagggcgtgaaaggagaaaagggtgaagggtgc
ggagcttgcttcacctccacgtcaggccagcagaccgcagcttccccagaacagggaacg
ccgggagcggggcccaccgaccagcagcaaggccccaggggggaggccgggaaccagggt
gagccaggtcccaagggtgactctggagatccaggtgccgccggaactccagggacccca
ggaaagccaggattacgaggatttcatggtctgaagggcgaaaagggggaccagtgcgcg
atctgccccaccattccagagggcttcaaagacgtgatcggacttcctgggagacccgga
cctcgaggagacgctggacctcctgggacagggaaacccgggaaacatggtttgcctggt
ctgccgggcgtggcgggcagtcagggtgataagggggagaaggggcaacgtggaccttca
ggactcggacagccggggaaatcggggaaggacggcacggcgggacggccgggtgaagtg
ggtgaagcaggagtgccgggcacacccgggtctgatgggccaaaaggcagcaagggccaa
gcgggagaacacgggatcccagggcaccctggagagccgggtgtgggaatacctggggca
cagggaaaggatggagagcctggggttccagggttaccggggaaacgaggcttcccaggt
gcgactggacttacaggtgaaaagggcgcagcggctgaaccctgtgtgtgtgttccaacc
caacaaggagaatggcggccgccgggtgattcggtagatcatggccttcccggtgcccag
ggtgagcgaacgacatggacaaatggacctctgggcccgcccggaccacccggaccacct
ggaccccctggagttcctgggccgccaggagcagttggaggaatcgggcgccagggcatt
ccagggaatgatggtttgccaggtgtgcctggactcccgggagaggtgcctccactgtca
ctgtttgctgggaggaacaactctttcttcaagcaggccttctgtggtaactgcaccaat
ggtttgccgggagcgcaggcctatactggggccaaggtggagcacacgtcacacggcact
cccggggcatctgccatcgaccactgtgagaagtgtaagcagaatcagcgcgaacttccc
cgtacagaggaggagaggccaaacgacagacactatggatacccaggaactccggggatg
cctgggatgccgggtgaagctggattgaagggagagcagggccctccgggacctcgtgga
tactctggatcacagggacaagcgggaccccccggattccctggtgctcccgggacccct
ggaacagctggacttcctggagaccggggactgaacggcgagcccgggccgaagggagag
aaggggccgtctggattgtcgggatacccaggaggagcagggattcccggtctcccgggg
ctgaaaggcgagcgtgggcccgtgggccctggaggagagacgggcgtatcgggtgttcct
ggtattcccggagcccagggcccgagcggctccgcgggctccaaaggtgacctaggacca
cccggccctcgtggggagaagggagaccagggatttcaaggacagccgggatttcctgga
cagcaggggccaatcggttttccagggaagtccgggtccccgggacctcctggagcatcg
ggtgagaagggctcagagggaaggacaggacttgtcggcccaacaggacctcaaggtcga
agtggacctccaggaataccgggaccctccggagtgcaaggcctcgatgggaaggacggg
aagccaggtgcccggggagaagttggtccccacggaccaccgggaatccgaggcggacat
ggctttaaaggaaagccaggactccccgggctacctggaatgaggggtgaaggggggcca
acgggaccgccgggggtaacgggacggccaggctttgagggtgagccaggaccgccggga
cctgctgggccaccgggacttccagggcatatgggcacagccggaactccaggaagtccg
gggcccgtgggaccgccgggaatgggagcgaagggtgagcgaggagcgatgggagagaga
gggctactcggcctggccggcatgcccggatcccccggtgcaccgggaatcatgggggag
cctggcgaagatggcccagcgggaaaagaggggcaacctggagcagctgggacggcaggg
cagccagggccaaagggtgacccaggaagagcaggagaaaagggagcccagggccagcgt
ggattgcccgggatctccatgggaggcttgggaaagagcagcggcatggcgctgcctgga
caacctggtgcccccggcgcacggggagaacgaggacaccccggaaccccaggacctgcc
ggcactcctggaatcccaggaacaccaggagctggggctgaagctattaatttcgatgag
atcaagaggttaataaggcaagaagttacgaagatctttgacgagagaatgacgtactac
ttggccagtatgcgttcatcagataccagcccgggcagaccaggaactccagggaaaatc
ggagcccctggacacccgggacagcctggtcagtcgggaatgccgggacagatgggaaga
gatgggcgaccaggaatacccggatccaaaggtccgagtggtcctaagggtgatcgtggc
gacaaaggcgtgggtcatgtgggcgagcctggtttacctgggccacagggtccacctgga
ctcccaggttatggtaaactgggctcaccagggccagttggccaacagggtatcccgggc
attccaggacaaccaggcaaccagggatcaaccgggaaggatggacgctgcctgccatct
caatgtgccatgcaaatgccagagccttacaatgccaagaattccaaaggaccatcttcc
tggatgaattaa
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integrated database retrieval system
