Leucoraja erinaceus (little skate): 129709786
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Entry
129709786 CDS
T09122
Symbol
pabpc4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri03015
mRNA surveillance pathway
leri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129709786 (pabpc4)
09123 Folding, sorting and degradation
03018 RNA degradation
129709786 (pabpc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
leri03019
]
129709786 (pabpc4)
03041 Spliceosome [BR:
leri03041
]
129709786 (pabpc4)
Messenger RNA biogenesis [BR:
leri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
129709786 (pabpc4)
mRNA cycle factors
Stress granule specific factors
129709786 (pabpc4)
Spliceosome [BR:
leri03041
]
Complex C
Other components
Complex C specific factors
129709786 (pabpc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_7
RRM_occluded
RRM_10
RBD_RDR6
RRM_5
OB_RNB
POP1_C
Motif
Other DBs
NCBI-GeneID:
129709786
NCBI-ProteinID:
XP_055512344
LinkDB
All DBs
Position
26:complement(21915456..21942396)
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AA seq
633 aa
AA seq
DB search
MNQTAASYPMASLYVGDLHADVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGDDMDDERLKEMFDKFGKTLSVKVMTDPNGKCKGFGFVSYEK
HEDAFKAVEEMNGKELNGKMLFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFAPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRAMPANTIINQFQQAAGGYFMPAVPQAQNRA
TYYAPNQMAQMRPSTRWQQQQTRPQGFQAVPNALRQGGPRPLRHLAPTGNAQGSRGVPNA
QRMGLSTAQNLAHRPGIAGPTPRGVPPYKYASTVRNPQQSVVQTQMGVQQASQSAVLVQG
QEPLTASMLAAAPPQEQKQMLGERLFPLIQSMHPSLAGKITGMLLEIDNSELLHMLESPE
SLRSKVEEAVAVLQAHQAKKEAAQKAAAVVATA
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgaaccagaccgctgccagctaccccatggcctcgctctacgtcggcgacctgcatgca
gatgtgaccgaggcgatgctatacgagaagttcagcccggccgggccagtgctctccatc
agagtgtgcagggacatgatcaccaggaggtcgctgggctacgcctatgtcaacttccag
cagcccgcagacgctgagcgtgccttggataccatgaactttgatgtcatcaagggaaga
ccaatccgcatcatgtggtcacagcgtgacccatcgctaagaaagtcgggagttggtaat
gtattcatcaaaaatctggacaagtccattgacaacaaggctctgtatgacactttctct
gcatttggaaacatcttgtcgtgtaaggtggtttgtgatgaaaatggctccaaaggatat
gcttttgtgcactttgaaactcaggatgctgctgatagagcaattgagaaaatgaatggc
atgttgctaaatgacaggaaagtatttgttggtcgttttaaatctcgtaaggagagagag
gctgaacttggagcaaaggcaaaagagtttaccaatgtttacataaagaactttggagat
gatatggatgatgaacgactcaaagaaatgtttgataaatttggcaaaactctcagtgtt
aaagtcatgacagatccaaatggaaaatgcaagggctttggctttgttagctatgaaaaa
catgaagatgccttcaaggctgtggaagaaatgaatgggaaggaactaaatggaaaaatg
ctctttgttggtcgtgcccaaaaaaaggtggaacggcaggctgaactgaaaagaaagttt
gaacagttaaaacaggaacggatcagtagatatcagggtgtgaatctatacatcaagaac
ctagatgacaccattgatgatgaaaaactgagaaaagagtttgctccatttggttcaatc
accagtgccaaggtaatgctggaggatggtcgaagcaaaggttttggctttgtttgcttc
tcctctcctgaggaagcgacgaaagctgtaacagaaatgaatgggcgtattgttggttcc
aagccattatatgtagcccttgctcaaaggaaagaggaacgcaaggctcatttaactaat
cagtatatgcaacgaattgcagggatgcgtgccatgccagccaatacaatcatcaaccaa
tttcagcaggctgctggaggctattttatgccagctgtgcctcaggcacaaaacagagct
acctattatgcaccaaatcagatggcccagatgagacccagtacccgttggcaacagcag
caaaccagaccccaagggttccaagccgtgccaaatgcccttcgtcagggaggtcctagg
cctcttcgtcacctagccccaacaggaaatgctcagggttctcgaggtgttcctaatgca
caaagaatgggattatctacagctcagaatctggcgcatcgccctggaattgctggccca
acaccacggggtgttccaccgtataaatatgcctccacagtccggaacccacagcaatca
gtcgtgcaaactcaaatgggcgtacagcaggcctctcagtctgcagtgctcgtacaagga
caggaaccactgactgcctccatgctagcagcggctcctcctcaggaacagaaacagatg
ctaggtgaacgtctcttcccgttgatccagagtatgcacccttccctagctggaaaaatc
actggaatgcttcttgagatagacaattctgagttgctacatatgttggaatctccagaa
tcactccggtcaaaggttgaagaagctgtggccgtgctgcaagctcaccaggccaagaaa
gaggctgcccagaaggcagctgcggttgtagctacggcctga
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