KEGG   Leucoraja erinaceus (little skate): 129709872
Entry
129709872         CDS       T09122                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
leri  Leucoraja erinaceus (little skate)
Pathway
leri03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:leri00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    129709872
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:leri03041]
    129709872
Spliceosome [BR:leri03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    129709872
 Complex C
   U5 SnRNP specific factors
    129709872
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_Prp19 Beta-prop_TEP1_2nd WD40_CDC20-Fz WD40_WDHD1_1st EIF3I Beta-prop_WDR3_2nd WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd WD40_Gbeta WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_Aladin NBCH_WD40 Beta-prop_EML Beta-prop_WDR41 Beta-prop_SPT8 WDR90_beta-prop_4th ANAPC4_WD40 Beta-prop_EIPR1 Beta-prop_IFT122_1st Beta-prop_SCAP WD40_MABP1-WDR62_1st WD40_RFWD3 Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_WDR19_1st eIF2A Beta-prop_WDR75_2nd Beta-prop_ACSF4 Ge1_WD40 Beta-prop_WDR35_TULP_N Beta-prop_HPS5 Beta-prop_NWD2_C Cytochrom_D1 PROPPIN
Other DBs
NCBI-GeneID: 129709872
NCBI-ProteinID: XP_055512481
LinkDB
Position
26:26886186..26903004
AA seq 348 aa
MIDQKRKAQEMALVQAKRPRNDLLPPVQGGPQQAVLQAGPPRTSSLQAPIMLLTGHEGEV
YCCKFHPNGSTLASAGFDRLILFWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSAST
DKTVAVWDSETGERIKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIHT
FQNTYQVLAATFNDTSDQIISGGIDNDIKVWDLRQNKLIYTMRGHTDSVTGLALSGDGSY
LLSNSMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSTDGSKIAAGSADRFV
YVWDTTSRRILYKLPGHAGSVNEVAFHPEEPIILSASSDKRLYLGEIQ
NT seq 1047 nt   +upstreamnt  +downstreamnt
atgatcgaccagaagcgcaaggcgcaggagatggcgctggtgcaggccaagcgcccccgc
aacgacctgctgcccccggtacaggggggcccgcaacaggccgtgctgcaggcgggaccc
ccaagaacctcgagtcttcaagctcccataatgcttttaacgggtcatgagggagaagtc
tattgttgtaaatttcacccgaatggatcaacactggcatctgcaggattcgatcgactc
atattattttggaatgtatatggcgactgcgataattatgctacattgaaaggtcacagt
ggagcagtgatggaattgcattataacacagatggcagcatgcttttttcagcatcaaca
gacaaaactgtagcagtgtgggacagtgaaacgggtgaaagaataaagagactgaaaggt
cacacatccttcgtgaattcgtgctatccagccagacgggggccacagttggtgtgtaca
ggaagcgacgatgggacagtgaagctatgggacattcggaagaaggctgcaatccatacg
tttcaaaacacgtaccaagtgctagcagcgacatttaatgacacaagcgatcagattatc
tctggtggtattgataacgacattaaggtttgggacctccgacaaaacaaattaatctat
accatgcgtggtcatacagactcggtgactggcttggcactaagtggtgatggctcttat
cttctttctaattctatggacaatacagtgcgagtctgggatgtgagaccattcgctcca
aaagagagatgtgtaaaaatattccaaggcaatgtgcacaactttgaaaagaacctcttg
agatgttcatggtcaactgatggaagcaaaatagcagctggatctgcagacaggtttgtg
tatgtctgggatacaacatcacgaagaattctgtataagttaccaggacatgcaggctca
gtgaatgaggtggcatttcatcctgaagaaccgatcattctatctgcatcgagtgataaa
agactctaccttggagagattcagtaa

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