Leucoraja erinaceus (little skate): 129710186
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Entry
129710186 CDS
T09122
Symbol
casc3
Name
(RefSeq) protein CASC3 isoform X1
KO
K14323
protein CASC3
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri03013
Nucleocytoplasmic transport
leri03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129710186 (casc3)
03015 mRNA surveillance pathway
129710186 (casc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
leri03019
]
129710186 (casc3)
Messenger RNA biogenesis [BR:
leri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
129710186 (casc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
129710186
NCBI-ProteinID:
XP_055512957
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All DBs
Position
27:9468463..9487704
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AA seq
718 aa
AA seq
DB search
MADRRRRRASQDTDEEDEEAPRREVEVVPTVPCILDLSGVQARGAESECESEDGIEGDAV
VLSDYESAEENGSQKSEENGGEYSEEETPKLETKKTSNEGNDDGAAKEVKPEEKGEITGE
RQSGDGQESIEPVENKIGTKSRRQLDDDEDRKNPAYIPRKGLFFEHDLRGHTEPEEVRPK
VRQRKLWKDEGRWVHDKFQEDEQAPKSRDELISMYGYDIRSDRNPDEIRPRRMRKPRFRS
PPNRDPDWMDEPPPRPYLRKTTNSIPTARTFNRRMSGPERRSPARNYSKNVCYNEDRENM
RPVEIYSSRSYHSSGELSNGENKMDGRNIEQSYARESVIVTDGLQSVKSNGVAREDDSKQ
NQSLPAENVPQVQEKTIEKKSYSRIRRTRNKVIEVEKPQPAEDTPVPGLVAPAQQTPDQP
VSPPASKAGSWDTPPVDSAVTALEQEMTQISLSGKNWTPNSQPQYVHPRELRGIPNSPHI
NASTAQYNRVEEMGSQARRAKRYSSQRQRPVPEALPPPPPPPPPPPPPPAPTPALGPGPA
PGPAPMHIGLMEGHYYDTLQFQGPIYTHNESPAPLPPQGLIVQPDMHLPHPVPGFNHHQS
PGHLTNTGLYAPQVPLPTGQPPPPQVLPPPFFTPGMMNYGNPSYPYPTGGLPPHIYPTTQ
AQSQVFGGVTYYNTVQQQALPKPSPPRRQSQPVTVKPPPPEVLDTSIIWFPRSLGQPK
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaggcggcggagacgtgcttctcaagacaccgacgaggaggacgaggaagcg
ccccgcagggaggtggaagtcgttcccaccgtcccttgcatcttagacttgtccggggtc
caggctcgcggagcggaatcggaatgtgagagcgaggatggcatagaaggtgatgctgtt
gtactttcagactatgaaagtgctgaagagaatggttctcaaaaatctgaagaaaatggt
ggagaatacagtgaagaggaaaccccaaaactggaaacaaaaaaaacaagcaatgaaggg
aatgatgatggagcagcaaaggaagtaaagcctgaagagaaaggggagattactggagag
agacagagtggagatggacaggaaagcatagaacctgttgaaaataaaataggtacaaag
agcaggcggcaattggacgatgatgaggatcggaaaaaccctgcctatattccacggaag
ggactcttctttgaacatgatctcagaggacacacggaacctgaggaagtgaggccaaag
gtccgacagcgcaagctctggaaagatgaaggtcgatgggtacatgataagttccaagaa
gatgaacaagccccgaaatcccgagatgaacttatttcgatgtatggttatgatattcga
tcagacagaaaccctgatgaaatcaggccgcgaaggatgaggaagccaaggtttagaagt
cctccaaatcgagaccctgattggatggatgaaccgccaccaaggccttacttacgcaaa
actactaatagcatacctactgcaagaacttttaaccgaaggatgagtggaccagaacgg
agatctccagcaaggaactactcaaaaaatgtttgttataacgaagatcgtgagaatatg
aggccggttgaaatctatagctcaagaagttaccactcttcgggggaactgtccaacggt
gaaaataaaatggacggcagaaacattgagcagagttacgcgagagagagtgtgattgta
acagacggtttgcagtcagtgaagagtaatggtgtggcaagagaagatgattccaaacaa
aatcagtccctccctgctgagaatgtgccacaggtacaggaaaaaacgatagaaaagaaa
tcctattcccgtatccgaaggaccaggaacaaagtaatcgaggtggagaaaccacagccc
gcggaggacacccctgtcccaggtttggttgctccagctcagcagacacctgatcaacct
gtctccccaccagcatcaaaggctggctcctgggacaccccacccgtagactcagctgtg
actgcgctagaacaagagatgacccaaattagcttatcggggaaaaactggactccaaat
agtcaaccgcaatatgtacacccaagagaactccgaggaattcctaattcaccacacatt
aatgcttcaactgctcaatataacagagtggaagaaatgggcagccaagcaagacgggca
aagcgttactcatctcaaagacaacggccagtacccgaggcactcccgccaccaccacct
ccaccaccaccaccaccaccccctccagcacctacaccagctctagggccgggcccagct
cctgggcctgctcccatgcacattggcctcatggaaggacactattatgatacattacaa
tttcaaggaccaatttatacccacaatgaaagcccggcccctctgccaccccagggcctg
attgtccagccagatatgcaccttcctcatccagttccaggttttaatcatcaccagtca
cctggccacctaaccaacactggtctttatgctccacaagtcccattgccaactggtcaa
ccacccccaccccaagtgctaccgcctcctttcttcacacctggaatgatgaactatgga
aatcccagttacccgtacccaactggaggactcccacctcacatttatccaactactcag
gcccagtctcaggtctttggtggagtcacttactacaacactgttcagcaacaggctctg
ccaaagccatcacctccaagacgacaatcgcagcctgttactgttaaacctccgccaccc
gaggtacttgatacatccatcatctggtttccacgcagcttagggcagccaaaatga
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