Leucoraja erinaceus (little skate): 129710197
Help
Entry
129710197 CDS
T09122
Symbol
dhx58
Name
(RefSeq) probable ATP-dependent RNA helicase DHX58
KO
K12649
ATP-dependent RNA helicase DHX58 [EC:
5.6.2.6
]
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
129710197 (dhx58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
leri04054
]
129710197 (dhx58)
Enzymes [BR:
leri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129710197 (dhx58)
Pattern recognition receptors [BR:
leri04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
129710197 (dhx58)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
RIG-I_C
ResIII
DEAD
Helicase_C
SWI2_SNF2
AAA_11
HydF_dimer
Cas3-like_C_2
RNA_binding
Hydantoinase_B
Motif
Other DBs
NCBI-GeneID:
129710197
NCBI-ProteinID:
XP_055512982
LinkDB
All DBs
Position
27:complement(10460312..10486686)
Genome browser
AA seq
678 aa
AA seq
DB search
MQIDLRDYQWEVVQPALEGKNIIIWLPTGAGKTRAAVFVARHHLDQKKGQGKVVVLVNKV
PLVNQHYDNEFMPFLTPKYNVVPISGDSELKEHFANVVRKNDVIICTAQILQNALNSTEE
EKYIQLTEFSLVIIDECHHTQKDGVYNKIMNQYIEVKHQNRKNLPQILGLTASPGTDGAN
TSNKAVDHIMQICANMDAEMIKSPTEWKQQLEEIVPQPIKNYDVTEERKLDPFGDQIKMM
MAKIHSQLDDSSITRKFGSQIYEQAVVELEKTGAIESSRLKRVCALHLRKYNDSLLINDT
VQMIDAFQYLEEFHDSEKLTKTVLDQTDRFLSRLFSENQDELLLIALKKEYENPKLDTLA
NILHDRFVVPNSQGIIFTKTRQSAHALYGWIKNCEQLKGPDIRAKCLTGAGVSSLTKHMT
QNEQQNVIADFRSGDINLLIATSVAEEGLDIKKCNVVIRYGLITNEIAMMQARGRARAEN
SVYSVVAEQGGREMRREFVNEYREGLMERAIEEVQKMSPRDYRIKIRELQLEDIIARKVK
DQMQMTKKRANRPEGLRFHCRNCNEPVFHASDLRIIEGMHHVNVNPDFKLYYKVSGKINL
PRKFEDWEPGGTVACRKCGQVWGMQIIFKSVPIPGLNIKHFVVDLGNERRPFKQWKSVPC
VIKEFNYIEYCQDNIRGL
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgcaaattgatttgcgtgactatcagtgggaggtggtgcaacctgccctcgaggggaaa
aatatcatcatttggctcccgacaggtgcaggcaagacacgggcagctgtgtttgttgcc
aggcaccatctggaccaaaagaaaggtcaaggcaaagtggttgttcttgtaaacaaggtg
cctctggtgaatcaacactatgataatgagtttatgccattcctaacgcccaagtataat
gtggtacccatcagcggtgattcggagcttaaagagcattttgcaaacgttgtgcggaag
aatgatgttatcatctgcacggcacagatcctgcaaaatgcactgaatagcacagaggaa
gagaagtacattcagctgacagagttttctctggtgattattgatgagtgccaccacact
cagaaggatggagtatataataaaatcatgaaccagtacattgaggtcaagcatcagaac
agaaagaatttaccacaaatccttggactcacggcatcacctggaaccgatggagccaat
acatctaacaaggcagtggaccatatcatgcagatctgcgccaatatggatgctgagatg
attaaatcacccacagagtggaagcaacagcttgaagaaatagttcctcagcctattaaa
aattatgatgttactgaagaaagaaaactggacccttttggagaccaaattaaaatgatg
atggcaaaaatccattcccaactagatgattcttcaatcacgaggaagtttgggtcacag
atttacgaacaagctgtggtagagctggagaaaacaggtgccatagaatccagcagatta
aagcgtgtctgcgcacttcacctccggaagtacaatgattctctactgatcaatgacacg
gtgcaaatgatcgacgcatttcaatacctggaggaattccacgacagtgaaaaacttaca
aagactgtcctggatcaaacagatcgattcctgtccaggctgtttagtgaaaatcaagac
gagttactcttaattgcactcaaaaaagagtatgagaacccaaagctggacacattggcg
aacatactccatgatcggtttgtggtcccaaactcccaaggaattatcttcacaaaaacg
cggcagagcgcacatgccttgtacggctggattaagaactgcgagcagttgaagggacct
gacatcagagcaaaatgtttaaccggggctggagtcagtagcctgaccaaacacatgact
cagaatgagcaacagaatgtaattgcagatttccgaagtggtgatatcaacctcctcatt
gctaccagtgtagctgaagaagggctcgacattaaaaaatgcaacgtggtcatccgctat
ggactcatcaccaatgagattgcaatgatgcaggccagagggcgagccagagcagaaaac
agcgtttattcagttgtcgctgaacaaggagggagagagatgcgacgggaatttgtaaac
gaataccgcgagggtcttatggaacgtgcaatagaggaagtacaaaaaatgtctccacgt
gactatcgaattaagattcgagagctgcaattagaagacataatcgcgcggaaggtgaag
gatcagatgcaaatgaccaagaagagggcaaaccgtccagaaggtctgaggtttcactgt
cggaactgcaatgagcctgtgttccacgccagtgacctccggatcatcgagggcatgcac
catgttaatgtgaatccagacttcaaactttactacaaagtatccggtaagataaacctg
ccaagaaaatttgaagactgggaacctggtggcacagtggcctgtcgcaagtgcggtcag
gtctggggaatgcagatcatcttcaagagtgtgcccattcccggtttgaacatcaaacat
tttgtagttgatttgggaaatgaaagaagacccttcaagcaatggaaaagtgtcccttgt
gtgataaaggagttcaactacattgaatattgtcaagacaatattcgaggtctctga
DBGET
integrated database retrieval system
