KEGG   Leucoraja erinaceus (little skate): 129710532
Entry
129710532         CDS       T09122                                 
Name
(RefSeq) lissencephaly-1 homolog
  KO
K16794  platelet-activating factor acetylhydrolase IB subunit alpha
Organism
leri  Leucoraja erinaceus (little skate)
Pathway
leri00565  Ether lipid metabolism
leri01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:leri00001]
 09100 Metabolism
  09103 Lipid metabolism
   00565 Ether lipid metabolism
    129710532
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:leri03036]
    129710532
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:leri04147]
    129710532
Chromosome and associated proteins [BR:leri03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    129710532
Exosome [BR:leri04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   129710532
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_TEP1_2nd WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_SCAP Beta-prop_EML Beta-prop_Vps41 Beta-prop_Nup120_160 Beta-prop_DCAF4 WDR90_beta-prop_4th WD40_RFWD3 Beta-prop_IFT140_1st LisH Beta-prop_SPT8 Beta-prop_DCAF12 Beta-prop_RIG_2nd LisH_PAC1 eIF2A Beta-prop_RIG_1st Beta-prop_WDR35_TULP_N Beta-prop_WDR19_1st Beta-prop_WDR75_2nd Nucleoporin_N Beta-prop_NUP159_NUP214 Pox_A_type_inc LisH_2 ARMC9_LisH SutA-RBD DUF2570
Other DBs
NCBI-GeneID: 129710532
NCBI-ProteinID: XP_055513544
LinkDB
Position
28:complement(5025638..5142629)
AA seq 410 aa
MVLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIR
LQKKVMELESKLNEAKEEFTSAGPLGQKRDPKEWIPRPPERYSLSGHRSPVTRVIFHPVF
SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDQNGKLLASCSADMTIKLWDFQ
SFECIRTMHGHDHNISSVAIMPNGDHIVSASRDKTMKMWEVQTGYCVKTFTGHREWVRMV
RPNQDGTLLASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYPTVLEATGSE
TKKSGKPGPFLLSGSRDKTIKMWDISIGMCLMTLVGHDNWVRGTLFHPGGKFIVSCADDK
TIRVWDYKNKRCMKTLNAHEHFVTSLDFHKTGPFVVTGSVDQTVKVWECR
NT seq 1233 nt   +upstreamnt  +downstreamnt
atggtgttgtcacagagacaaagagatgaattaaatcgagctatagctgactatcttcgt
tctaatggctatgaagaggcttattcggtttttaagaaggaggcggaattagatatgaat
gaagaattagacaaaaaatatgctggattgctggagaaaaaatggacctccgtgataaga
ttacagaagaaggttatggaattagaatcaaaactcaatgaagcaaaagaagaatttaca
tcagctggccccctgggtcaaaaacgtgaccctaaagaatggatccctcgtcctccagaa
agatattccctgagtggacacagaagtccagtcacaagagttattttccatccagttttc
agtgtcatggtatcagcttctgaggatgctacaataaaggtctgggactacgagactgga
gacttcgagcgtacgctgaaaggccacacagactctgtacaagatatctcctttgatcag
aatggcaagctgttggcatcctgttctgctgacatgaccatcaagctttgggatttccaa
agctttgaatgcattaggaccatgcatggccacgatcataatatttcatcagtagctatc
atgcctaatggagatcacatagtgtctgcctcaagggataaaaccatgaaaatgtgggag
gtccagactggttattgtgtgaagactttcacgggacatagagaatgggtgcgcatggtc
cgacccaaccaggatggaacccttctggccagctgttccaatgatcagacagtgcgcgtg
tgggtggtagcaacaaaggaatgtaaagctgaacttcgagagcatgaacatgtggtagaa
tgtatttcctgggcaccagagagctcctacccaaccgttctggaagcaacaggatctgag
actaaaaagagtggcaaacctggacctttcctcctgtcaggatccagagacaagacaatt
aagatgtgggatattagcattggaatgtgccttatgacactggttggccatgataactgg
gtacgtggtactctgtttcatcccggaggaaagtttattgtgagctgtgctgatgacaaa
actattagagtctgggattacaagaacaaacggtgcatgaagaccctgaatgcacatgaa
cactttgttacctctcttgatttccacaagacgggtccatttgttgtcactggaagtgta
gatcaaacggtaaaggtgtgggagtgccgctga

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