Leucoraja erinaceus (little skate): 129710737
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Entry
129710737 CDS
T09122
Symbol
lig3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
129710737 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
leri03400
]
129710737 (lig3)
Enzymes [BR:
leri01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
129710737 (lig3)
DNA repair and recombination proteins [BR:
leri03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
129710737 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
129710737
NCBI-ProteinID:
XP_055513914
LinkDB
All DBs
Position
28:complement(18563816..18600819)
Genome browser
AA seq
1025 aa
AA seq
DB search
MFSGSDCGRRRLQPQMYRLFSQFTKILLRLEKTHPVQSQLNTLRVESQSIPTLFSVTYFQ
VVQLVHLFSVRLVVNNIWLSAVQGLRRCVISPVVVTFSWAPSCTFFISNAKMPEQRYCVD
YAKRGTAGCKKCREKLPKGSVRIGRIMPNPFSEGTDMKEWYHIKCMFEKLERARLSTKKI
DDLTDLEGYLELQDPERDLINQHIKELVVKNGLLSSKVKSPSSKPTAVTPSPRKFSGFSA
KAETLDEEPSTSTNTQSVGVCDPNHKDCSLREFRKLCAMIADKPSYNIKTQIIQDFLKKG
TGGDGKFHGDVYLTIKLLLPGVVKTVYNLSDKQIVKLFSRVFNCNLDDMVRDLEQGDVSE
TVRIFFDQSSSFPPAHKSVMTIHDVDSALIQLSQMTREEDQQKELQTIASKCTANDLKCI
IRLIKHDLRMNSGAKHVLDALDPNAYEAFKASRNLQDVVDRVLQNQQESERVPGMKKILS
VKANLLTPVQPMLAEACKSIEYAMKKCPNGMYAEIKYDGERVQVHKNGDTFQYYSRSLKP
VLPHKVAHFKDFIPKAFVGGDSMILDSEVLLIDTNTGKPLPFGTLGIHKKLAFKDANVCL
FVFDCIYFNGVSLMNRPISERKQFLSDNMVEIPNRIMFSEMKHVTRASDLGEMINRVIKE
GLEGLVLKDLKSLYEPGKRHWLKVKKDYLNEGAMADSADLVVLGAFYGQGNKGGMMSIFL
MGCFNPNTSRWCTVTKCGGGHDDATLARLQNELDMVKISKDPSKVPSWLNVTKNYIPDFI
VRDPKKAPVWEITGAEFSKSEAHSADGISIRFPRCTRIRDDKDWETATNLPQLKDLYRAS
KMNEGADIVVVPEKDDDEWPSGGSGASDMTSKQTPHGSNTSSKLPAKKSKSEGGNRTSQK
SPPESSTRKTLKRKLPAMERNGKKIKSPVNEKSNGSLLSSPSLPSPNQTLLDIFTGVKLY
LPASVQDFDRIRRYFIAYDGDLIKEYDVATATHLIGEVEDNTCAKRVSVNWIWACIKKRR
LVPPF
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atgtttagcgggagtgattgtggtcggagaagactgcaaccacagatgtaccggctgttt
tcgcagtttacaaaaattttgcttcggctcgagaagactcatccagtacaaagtcaactc
aatactttgagagttgaaagccaaagcattcccaccttgttttctgttacatattttcag
gtggtccagcttgttcatctcttctcagtacgtttggttgtgaacaacatctggttatca
gcagtgcaaggattgagacgttgtgttatcagcccagttgtcgtgacattctcttgggct
cccagttgtacatttttcatatcaaacgccaaaatgccagagcagcgatattgtgtggac
tacgcaaagcgtggcacagctggctgcaaaaagtgcagagaaaaactcccaaaggggtcg
gtgcggattgggaggattatgccgaatcccttttctgagggaactgatatgaaagaatgg
tatcacattaaatgtatgtttgagaagctggaaagagcccgactaagtaccaagaagatc
gatgacttaactgatttagaaggttatttagagcttcaggatcccgagagggatcttatc
aaccaacatattaaagaacttgtggtcaagaatggcttgttatcctcaaaagtcaagtcc
ccttcaagtaaaccgacggcagtcaccccatcacctcgtaaattctctggattttctgct
aaagcagagaccctcgatgaagagccctctacctccacaaatacacaatcggttggagta
tgtgaccccaaccacaaggattgttccttgagggaattccgtaaactgtgtgccatgatt
gcagacaaaccgagctataatattaaaacacagatcatacaggactttttgaagaagggc
actggtggggatggtaaattccatggggatgtttatctgactataaagctacttttacca
ggagtggtgaaaacagtttacaacctgagtgacaaacagattgtcaaactgttcagcaga
gtattcaactgcaaccttgatgacatggtgcgagacttggagcagggtgatgtctccgaa
actgtgcgtatcttttttgatcagagtagtagtttccccccagctcataagagtgtgatg
acaattcacgatgttgattcagcactcattcagctttcgcaaatgaccagggaagaagat
caacagaaggagctacagactattgcttcaaaatgcacagctaatgacttgaaatgcatt
atcaggctgattaaacatgacctacggatgaattctggtgcaaaacatgtgttggatgct
ctagatcccaatgcttacgaagctttcaaagcttctcgtaatttgcaagatgtggttgac
cgtgttctacagaaccaacaggaatctgagcgggtaccaggaatgaagaaaatactcagt
gttaaggccaaccttttaaccccagtacaaccaatgctggctgaagcctgcaaatcaatt
gaatatgctatgaagaagtgtccaaatggaatgtatgcagagatcaaatatgatggggag
agagttcaagtgcacaagaatggagacaccttccaatattacagcagaagcctgaagcct
gtgttaccacataaagttgctcatttcaaagatttcattcccaaagcttttgttggtggt
gacagtatgatcttggattcagaagttctgctgattgatacaaacactgggaaaccactc
ccatttggaacgctgggcattcataagaaactcgccttcaaggatgcgaatgtttgtctt
tttgtatttgactgcatttattttaatggagtcagtctcatgaacaggccaataagtgaa
cgaaagcaatttctatctgataacatggttgaaattccaaacaggatcatgttttcggag
atgaagcatgtaacaagggcctccgatctgggagaaatgatcaatagagttatcaaagag
ggattagaaggactagtactgaaagaccttaagagtctctatgaaccaggcaaacggcac
tggctaaaagtaaaaaaagactatctcaatgaaggtgcgatggctgattctgcagacctt
gttgtgctgggagcattctatggacaagggaataaaggtgggatgatgtctatcttcttg
atgggctgctttaatccgaacacttcacggtggtgcacagtgaccaagtgtggaggtggc
cacgatgatgcaactctggcccgattacagaatgaactcgacatggtgaaaataagcaag
gatccaagcaaggtgccaagttggctaaatgtcaccaagaactacattcctgacttcatt
gttcgagacccaaagaaagcaccagtttgggaaatcactggagcagaattctcaaaatcg
gaggcccattctgcagatgggatatcaatccgattcccacgatgcacccgaatccgtgac
gataaagactgggaaacagcaacaaaccttcctcaactcaaggacttgtacagagcttct
aaaatgaatgaaggtgctgatattgtggtagttcctgagaaagatgatgatgaatggccc
tcgggtggttctggtgcctctgatatgacatcgaaacagaccccacatggttcaaacact
tcctccaaattgcctgcaaagaaaagtaagagcgaaggaggaaacagaacttctcaaaaa
tcaccacctgaaagttcaacgagaaagacgttgaagagaaaattgccggcaatggagcgg
aacggaaagaagatcaaatctcctgtaaatgaaaagagtaatggctctttgctttccagt
ccatctctgccatctcctaatcagaccttgctggacatatttacaggggtaaaactttat
ttgcctgcatctgtgcaagacttcgacagaattcggcggtatttcattgcatatgatggt
gatctgattaaagagtatgatgtagccacagcaacacatctgattggtgaagtagaggat
aacacatgtgccaaacgtgtctctgtgaattggatatgggcgtgcatcaagaaaaggcgg
ctggttccaccattctga
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