Leucoraja erinaceus (little skate): 129711087
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Entry
129711087 CDS
T09122
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri03013
Nucleocytoplasmic transport
leri03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129711087 (upf1)
03015 mRNA surveillance pathway
129711087 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
leri03019
]
129711087 (upf1)
Enzymes [BR:
leri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
129711087 (upf1)
5.6.2.5 RNA 5'-3' helicase
129711087 (upf1)
Messenger RNA biogenesis [BR:
leri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
129711087 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
129711087 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
129711087
NCBI-ProteinID:
XP_055514445
LinkDB
All DBs
Position
29:complement(6804326..6858088)
Genome browser
AA seq
1103 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSPTQTQGQSQGPGDGQVNG
PDGVLQNGAVDDAVAKASQLLPELNFEEDEEDTYYTKDLPLHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGH
VIKVPDSILYYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETS
VSGYIYHKLLGHEVEDVIIKCQLPKRFTAHGLPDLNHSQVYAVKTVLQRPLSLIQGPPGT
GKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHHTGLKVVRLCAKSREAIDSPV
SFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCT
CVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
KAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFD
FQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPY
EGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDP
RRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKP
RKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSGQAGRPSNMYFQTHDQIGMIGASPSH
VAAMNIPIPFNLMMPPMPPPGYFGQANGPAAGRGIAKGKLSRGARQRNRGLGNQINSQGN
LPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVA
LSQDSTYQGERAYQHGVTGLSQY
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggacgcgtacgggccgagctcgcagacgctgaccttcctggacaccgaggag
gccgagctgctcggcgcagacacgcagggctccgagttcgagttcaccgactttactctg
ccgtctccgacccagactcaaggccagagccaaggccccggcgacgggcaggtgaatgga
ccagatggtgttctccagaatggagcagttgatgatgccgttgccaaagcaagtcagttg
ttgccagaactgaactttgaggaggatgaagaggatacatactacaccaaggatcttcca
ctacatgcgtgcagttattgtggaattcatgatccagcctgcgtagtttattgcaatacc
agcaagaaatggttctgtaatgggcgtgggaacacctctggcagccatattgtaaaccat
ctggtgagagccaagtgcaaggaggtgactctgcataaagatggaccactgggagagact
gtgctggagtgctacaactgtggctgcaggaatgtgtttctccttggttttattcctgcc
aaggctgactctgtggtggtgctactgtgcaggcaaccgtgtgctagtcagagcagcctg
aaggacatcaactgggacagttcacagtggcagccattaatccaggatcgttgctttctg
tcctggctagtgaagattccttcagagcaggagcaactgcgagcccgtcagatcacagcg
cagcagatcaacaagctggaggaactctggaaggataatccatctgccacccttgaggat
ttggagaaacctggagtagatgaggaaccccagcatgtgctcctccgttatgaagatgct
tatcaataccagaacatctttgggccactggtcaagctggaggctgattatgacaaaaag
ttgaaagaatcacagactcaagacaacatcacagtcagatgggacttgggtctaaacaag
aaaaggattgcatactttaccctacccaaaactgattctgacatgcggctgatgcaagga
gatgagatttgtttgcgctacaagggtgaccttgcacctctgtggaaaggaattggacac
gtgattaaagtcccggacagtatcctttattatggggatgagatcgcaattgagctccgc
agcagcgttggagctcccgttgaagttactcacaacttccaagtggattttgtctggaaa
tcaacttcatttgatagaatgcagagtgcactgaaaacctttgcagtggatgagacctct
gtgtctggctacatttaccacaagttgcttggccacgaagtggaagatgtaattattaaa
tgccagctgcccaaacgcttcactgctcatggtctgccggacctcaatcactcacaggtc
tatgctgtaaagactgttctccagcgtccactcagtctgattcaaggcccacctggaact
ggcaaaactgtcacctctgctactatagtctaccacttggccagacagggcaatggccct
gttctggtgtgtgctccaagtaacatcgcggtagaccagttgaccgagaagatccaccac
acaggtctgaaggtggtgcggctgtgcgccaagagtcgcgaggccattgattcaccagtc
tcgttcttggctttacacaaccagatccgtaacatggacagcatgcctgaattgcagaag
ctgcagcagctgaaggatgagactggcgagttgtcatctgcagatgaaaagcgctaccgt
gcccttaaacggacagccgagcgagagctgctgatgaacgcagatgtcatctgctgcacc
tgtgtcggagctggtgacccccgtctggctaagatgcagtttcgttccattctgatcgat
gagagcacccaggccacagagccggagtgcatggtcccagtggtcctgggagcaaaacag
ctgatcctggtcggcgaccattgccaactgggtcctgtggtcatgtgcaagaaagctgcg
aaagctggtctgtctcagtctctgtttgagcgtctggtcgtcctggggattcgaccgata
cgtctgcaggtccagtaccggatgcacccagccctcagtgccttcccatccaacattttc
tacgaaggctccctgcaaaacggtgtcactgcagcggatcgcattaagaaaggttttgac
ttccagtggccacagccggacaaaccaatgtttttctacgtgacacaaggccaggaggaa
attgccagttcaggcacctcctaccttaataggactgaggcagccaatgtggagaagatc
accactaaacttctgaaggcaggtgccaagccagatcaaattggcatcattacaccatat
gaagggcagcggtcatacctggtgcagtacatgcagttcagtggctctctgcacaccaaa
ctctaccaggaggtggagattgccagcgtggatgcattccagggacgtgaaaaggatttc
atcatcctgtcatgtgttcgagcaaatgaacaccagggcattggatttctcaacgatcct
cgccgtctgaacgtggccctgacgagagcaagatatggcgtgatcattgtgggcaatcca
aaggctctgtccaagcagccactgtggaatcaccttctgaactattataaagagcagaag
gtactggtggagggaccgctgaataatctgcgcgagagtctgatgcaattcagcaaaccc
cggaagctcgtcaacaccatcaacccgggagctagattcatgaccacagccatgtacgat
gcccgagaagccatcatcccaggctctgtgtatgaccggagtggccaagcgggtcgccct
tccaacatgtacttccagacccatgaccagattggaatgattggagccagtcccagccat
gtcgctgcaatgaacatccctatccccttcaacctgatgatgcctcccatgcccccgccg
ggctactttgggcaggcaaatggtcctgcggcaggtcgtgggattgcgaaagggaagctg
agccgtggggcccgccagagaaaccgtggcctggggaaccagatcaacagccagggcaac
ctgcccaacagccaggccagccaagatgtggtgtcgcagccattctctcagggcccactt
acccaggggtacatctccatgagccagccctcgcaaatgagccaaccaggcctgtctcag
ccagaactctcacaggacagttatctgggagatgagttcaagtctcagatcgacgtggcc
ttgtcgcaggattccacttaccagggagaacgtgcgtatcaacatggagtgaccgggctg
tcacagtattag
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integrated database retrieval system
