Leucoraja erinaceus (little skate): 129711088
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Entry
129711088 CDS
T09122
Symbol
ddx49
Name
(RefSeq) probable ATP-dependent RNA helicase DDX49
KO
K14778
ATP-dependent RNA helicase DDX49/DBP8 [EC:
5.6.2.7
]
Organism
leri
Leucoraja erinaceus (little skate)
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
leri03009
]
129711088 (ddx49)
Enzymes [BR:
leri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129711088 (ddx49)
Ribosome biogenesis [BR:
leri03009
]
Eukaryotic type
90S particles
Helicases
129711088 (ddx49)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
TMEM247
Motif
Other DBs
NCBI-GeneID:
129711088
NCBI-ProteinID:
XP_055514449
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All DBs
Position
29:6788239..6800144
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AA seq
501 aa
AA seq
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MTLHGSGVTVMAAVKATGGLAALGLRAWLAEQGGQLGIRQPTPVQENCIPAILRGQDCLG
CAKTGSGKTAAFVLPILQKLSEDPYGIFCLVLAPTRELAYQIAEQFRVLGKPLSLKDCVV
VGGMDMVKQALELARKPHVVIATPGRLADHLRSSATFSLKKIKFLVLDEADRLLEQGCTD
FTQDLEVILRAIPAQRQTLLFSATLTDTLQQLKAIAMNKPFFWEAKTEVRTVAELEQRYL
LMPERVKEAYLVNIVQKFHDEHEDWSMIIFTSTCKMCQILTMMLRKFNFPCGALHSMMKQ
RDRFSTLSKFKSSIFKILVATDVASRGLDIPTVHVVINHNTPGLPKIYIHRVGRTARAGR
NGISITLVTQYDIHLVHAIEEEIKTKLQEFSVVEDDVLKILTHVNVTRRQCESELESTDF
DEKKEINKRKQMILEGRDPDLEIKRRKELNKLKEKKRQFQEKMHETLEREAATRLKHRLL
KKRRKQQQTALKAPGSGRSQT
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgacgttgcacggcagcggggtgacggtaatggcggcggtgaaggcgacgggcggcctg
gcggcgctcgggctccgggcctggctggcggagcagggcgggcagctgggtatccggcag
cccactcccgtgcaggagaactgcatccccgccatcctgaggggccaggactgcctcggt
tgtgccaagaccggcagcgggaagacggcagcgttcgttctccccattctccagaaactg
tcggaggacccgtacggaatattctgcctggtgctggcaccaacaagggagctggcctac
cagattgcagaacagttccgtgtgctggggaagccactgtccctgaaggactgcgtggtc
gtcggcggcatggacatggtcaagcaggccttagaactggccaggaaaccgcacgtggtc
atcgccacaccaggacgcctggctgaccacttgcgcagctccgccaccttcagcctgaag
aaaatcaagttcctggtactggatgaagctgaccggctactggagcagggatgtactgat
ttcacacaggacctggaggtgatcctacgggccatcccagcacagcgacagactctgctg
ttcagcgccaccctcaccgacaccttgcagcagctcaaggccatcgcaatgaacaagccc
ttcttctgggaggctaagactgaagttcgcacggtggcagagctggagcagagatacctc
ctgatgcccgagcgggtgaaggaagcttaccttgtgaacattgtccagaagttccacgat
gaacacgaggactggtccatgattattttcacaagcacgtgcaaaatgtgtcagattctc
accatgatgctgcgtaaattcaacttcccgtgtggggcgcttcactccatgatgaagcag
agggacaggttttccacactctccaagtttaagtcgagcatcttcaagatcctcgtggcg
actgatgtggcttcacgagggctcgatattcccaccgttcatgtcgtcatcaaccacaac
acacccgggctacccaagatctacatccaccgcgtgggccgaacagccagggcaggtcga
aacggtatctcaatcacccttgtcacccagtacgacattcacctcgttcatgcaatcgag
gaggaaataaagaccaaactgcaggagttttctgtggtcgaggatgatgttttgaagatt
ctcacccacgttaacgtaactcgacgccagtgtgagagtgaacttgagtcgactgacttt
gatgaaaagaaagaaatcaacaagcggaagcagatgattctagaaggacgggatccagac
ctggagataaagaggagaaaggagctgaataaattgaaggagaagaagcgccaatttcag
gagaaaatgcacgagactctggagagggaggcagccacaaggctcaaacacagactactg
aaaaagagaagaaaacaacagcagacagcactcaaggctcctggctcaggacggtctcaa
acgtag
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