Leucoraja erinaceus (little skate): 129711627
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Entry
129711627 CDS
T09122
Symbol
nphp4
Name
(RefSeq) LOW QUALITY PROTEIN: nephrocystin-4
KO
K16478
nephrocystin-4
Organism
leri
Leucoraja erinaceus (little skate)
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
leri03037
]
129711627 (nphp4)
Cilium and associated proteins [BR:
leri03037
]
Primary cilia and associated proteins
Nephronophthisis-related proteins
129711627 (nphp4)
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Gene cluster
GFIT
Motif
Pfam:
Astro_capsid_N
CUB_CDCP1_1
Motif
Other DBs
NCBI-GeneID:
129711627
NCBI-ProteinID:
XP_055515384
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All DBs
Position
30:complement(10648143..10828767)
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AA seq
1365 aa
AA seq
DB search
MAAAHQSYWRLANLGIPPHPQRYQALLDESEPFQLVLKILEGLPFRASLLEGVANVQCQL
RLSLFDTTYSHFFGRTWKSSPQPIKHTHGQPAKVSFNQAVYFHISLNCTHIAIIVEVVAI
AKKHEGNEQILSCGFGILQLPNRQKLASEADKSKKVKRLNLYHGTPRALLHPVSEDSTER
SKFMTLIEGSAVFYTLLTHPPLMEVRHLIPENLLISGSDTIPGLAASTGQTSDALRKPNL
LKTVTCFLDKLSLQLYPTVEKFEEELVELLNADRLLKNDQITDGSTVVIQERRLHVGVHN
GLCYVQKPQVVVLIPATMQRKSGAISKNLLKKSLILRSRIQLTEMVKHEFFGILFHLEYV
FHTSTGLRKVSSMSLENTAYMQTLRWAVWNPFLGPNSNSDITVSLHGGPSPNPCNLLVYK
TPSTEMSSDEVKQVESGTITFHFSCRADRHLSTSPEQPANTPDKKPQLSSSSLWKTSDSS
GPQHGTGEALQRGSIIYMDSNAVLNAQTLEQLHELPFTSMQAPIMAMGTEVGGTTTVTSR
ASLAQMQAFGFPEIRDDKNELAVVIDSEKLPSMNLRMEEEDHLQCNEIILQFLAYSRVPR
ESDHPRSVYFTLQFYRFPPVTTQQLQLVKMKKKGPKSSMHFILVPLNKNGIGNIDSPGLE
LKFMVEPSLMKDGEQRWFMQYLALQTLQIDVWDAESLLLIGTASVDLKHLLRHGLSAVQV
SHELEVVNTDYAPDVPMSISDFTNHGAVKPYGVTTVIKGRLHLRLGNVGHRSEQRVKRPF
PTLQSKIISAHDNTSKFYGGSLTTLTVGNVNGYKVYRAQRLVDLDGELASVLFSRARINS
VGQMQSDSDGEIIRKRKLSRMIAVRQQESGTDLPSKSHILVKREXMMPHERDLQVIEAYR
EQLKAQSINKMLSLAITTQFTLYSTLGNAEFFEFTLKNPYSVQHTVTVECEHPELSVIVN
SREWKYFKNLSKVQTPLEEDMFHIDGGVQFPQIYLRPKETVYIPFKYQTFSVDHSVAPQG
PSDGGLARKNLTNREQPHTPKKIEVYFKIEDKKPIAILHVSVEAQPYVIDQTFRFYHPEL
TFLKKSIRLPPFQFLTDMKVKESQAEFQIYVRCTDLNVICNIKKMAPNEPQDIFLKVACG
PTPEIKKFFVLIYMDPWLAMPIQVWQFYVQSLQRVDVNCVVGQLAQLSLVLRGTQSARKV
AAYTSDPEEIQITPSDVFTLPPHVVKDLHLRIRPQIEGERCIYLNVVDVDFRQLVASWLV
CLTCKQPTICKAFEISISVEEGKGINKRINYTNPYPTKRLYFLRTNRADLLLFKEDSFEL
EGGETYHIGLRFAPVLNTGEEEILVFINDQAENNEETYCVKVTYQ
NT seq
4098 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcgcatcagtcctattggcgcctggcgaacctgggcatccctcctcacccc
cagcgctaccaggcgctgctcgacgagtcggaaccctttcagctcgtgttgaagattttg
gaggggttacctttcagagcgagtttgttggagggagtggcgaatgtacagtgtcagctg
cgactgagcctctttgatacaacatactcccatttctttggcagaacgtggaagagttct
ccacagcccataaaacatacccacggtcagccagcaaaagtatcatttaaccaggctgtt
tatttccatatttccctaaactgtactcacattgcgataattgtggaggtggtggctatc
gcaaagaaacatgaaggaaatgaacagatcctctcgtgtgggtttggaattcttcaatta
ccgaacaggcagaagcttgcatcagaggccgataaatctaaaaaagttaaaaggttgaat
ctctatcatggcactccaagagcattgctgcatccagtgtcggaggactctacggagagg
agtaaatttatgacattgattgaaggcagcgccgtcttttacacgctattgactcatcct
cccctgatggaagttcgtcacctcatcccagaaaacctattaatctcagggtcagatacc
atccctggtttggctgcaagtactgggcaaacaagtgacgctctgaggaaacctaatttg
ctgaagactgtaacctgcttcttggataagctgtcgcttcagttatacccaacagtggaa
aaatttgaagaggagctggtggaattgcttaatgcagaccggctgcttaagaatgaccaa
attactgatggaagtactgttgttattcaagaacgaaggctgcatgttggggtacacaat
ggcttgtgttacgtccagaagccacaggtggtggttttgataccagcgacaatgcaacgg
aaatctggggccatctctaaaaatttgctgaagaaatctctgattctcagaagtcgcatc
cagctgaccgaaatggttaaacatgaattctttggtatacttttccacttggagtatgtg
ttccacacctccacaggactaagaaaggtatctagcatgtcattggaaaacactgcatat
atgcaaacactgaggtgggcggtttggaatccattcttgggacccaacagcaactctgat
ataacagtatcacttcatggtggaccctcacccaacccatgcaatttgctggtttacaaa
actccctccacggagatgagttcagatgaggtgaaacaggttgaatcgggtaccatcacc
ttccatttctcatgtcgtgcagatcggcatttgagcacgagtcctgagcaaccagcgaat
acacctgataaaaaaccccagttgtcctcttcatccttgtggaaaacctcagattcttcc
gggcctcaacacgggacaggggaagctctgcaaagaggaagcatcatttatatggactca
aatgctgttctgaatgcccagacattggagcaattgcatgaattgcctttcacatcaatg
caggcaccaatcatggccatgggaacagaggttggagggacaactactgtgacttcaagg
gcatctttggcacaaatgcaggcatttggctttcctgagatccgagatgataaaaatgaa
ctggcagtggtaattgattcagaaaagctaccaagcatgaatctacggatggaagaagaa
gatcatcttcagtgcaacgagataattctgcaattcctggcttacagcagggtacctcgg
gaaagtgatcatccaagatcagtctacttcaccttacagttttatcgctttccaccagtt
acaacccaacagctgcaacttgtgaagatgaaaaaaaagggacctaaaagttccatgcat
ttcatcctggtaccactaaataaaaatggcattggtaatatagattccccagggttggag
ctgaaatttatggtggagcccagtctcatgaaggatggagaacagcggtggtttatgcag
tacctggccttgcagacactgcagattgatgtctgggatgcagagtctttgcttttgatt
ggcactgcttctgttgacctgaagcatttgctacgtcacggtctttctgcagtccaggtg
tcccatgaactggaggtggtaaacacagactatgccccagatgtaccgatgtccatatct
gatttcacaaatcatggtgccgttaagccttatggagtgacaacagtaataaaaggaagg
ctacatctgcgcctaggaaacgttggtcaccggagtgagcagagagtgaagagacctttt
cctactcttcagtccaagatcatttctgcccatgacaataccagcaagttttacggagga
agtttgactactctaactgtagggaacgtaaatggttacaaggtgtacagagcacagcgt
ttggtggacctagatggtgagctggcctcagtccttttttccagagcaaggatcaacagt
gttgggcagatgcaatcagacagcgacggagagatcattcgcaaacggaagctgagccgg
atgatagctgttcgacagcaagagtctggcactgatcttccatcaaagagtcacattctg
gtaaaacgtgaatagatgatgcctcatgagcgagacctgcaggtcatagaagcatatcgc
gagcaactcaaagcacagagcatcaacaagatgttatccctggccattaccacacagttc
acattgtactctacacttgggaatgctgaattttttgaatttactctgaaaaatccttac
agtgttcagcatactgtaacagttgagtgtgaacatccagaactcagtgtcattgtgaac
agcagagaatggaagtacttcaagaacctgagcaaagtacagacccctttggaagaggat
atgttccacattgacggaggtgtgcagttcccacaaatctacctacggcccaaagagact
gtctatatcccatttaaatatcaaaccttcagcgttgatcattctgttgccccacagggt
ccatctgatgggggtcttgctagaaagaacctgactaatcgggaacagccccacacaccc
aagaagattgaagtatattttaaaatagaagataagaagccaattgctatcctccacgtg
agtgttgaggctcagccttatgtgattgatcagacattccgcttttaccatcccgagctt
acatttttgaagaagtctatccgcctcccaccatttcagtttctgacagatatgaaggtg
aaggaatcacaagccgagtttcaaatatatgtccgttgcaccgatttaaacgtcatttgt
aacataaagaaaatggctcccaatgagccccaagatattttcttgaaagtggcatgtgga
cccactccagagatcaagaagttttttgtcctgatttacatggacccctggctggccatg
cctatccaggtatggcagttctatgtacagtcactccagcgggtagatgtcaactgtgtg
gtgggccagctagcccaattgtcactggtgttgcgaggcacacaatctgccagaaaggtg
gctgcctacacctcagaccctgaagagattcagattacgccatcagatgtctttacactt
ccaccacatgtggtcaaagatctgcatcttcgcatccggcctcagatagaaggagagaga
tgcatctatctgaatgtggtagatgtagatttccgtcagctggtggcttcttggcttgtg
tgcttaacctgtaaacaacccaccatctgtaaggcctttgagatctctatttctgtcgag
gaagggaaaggtatcaacaagcggatcaattacaccaatccctacccaacaaaacgattg
tacttcctgcgaaccaatcgcgctgatttactcctgttcaaagaagattcttttgagctt
gaaggtggtgaaacctaccacataggcctacggtttgcaccagtcctgaatactggggag
gaggaaatcctggttttcattaatgatcaggcagaaaacaatgaagaaacttattgtgtg
aaagtaacataccaataa
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