Leucoraja erinaceus (little skate): 129712148
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Entry
129712148 CDS
T09122
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129712148 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
leri03041
]
129712148 (prpf4)
Spliceosome [BR:
leri03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
129712148 (prpf4)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
ANAPC4_WD40
PRP4
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_SCAP
Beta-prop_RIG_2nd
WD_LRWD1
Beta-prop_IFT122_1st
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_WDR11_1st
Beta-prop_WDR35_TULP_N
WD40_like
Nbas_N
Motif
Other DBs
NCBI-GeneID:
129712148
NCBI-ProteinID:
XP_055516349
LinkDB
All DBs
Position
31:27177856..27204365
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AA seq
506 aa
AA seq
DB search
MSDDDDIPLPKKSRIYYGSLEEKERERIAKGEGGYLGRDAMKLGVEAGHINISSGEFYDV
EDHISERQAEVLAEFERRKRARQINVSTDDAEVKACLRALGEPITLFGEGPAERRERLRN
ILSVVGADALKKTEKLEDSKKGRQEHQQTWYHEGPSSLKTARLYIARFSLPRALKRLEEA
RANKETPDPSRTARQQELHKGLRALNNFCSQIGDDRPISYCQFSPNSKLLATASWSGLCK
LWDIPDCRLVRTLRGHSTNVGAIVFHPQATISLNEKDCNMASCAADGSVKLWNLESDEPV
ANIEGHTVRVARVAWHPSGRFLGTTCYDHSWRLWDLEAQEEILHQEGHSKGVYDIAFHRD
GSLVGTGGLDAFGRLWDLRTGRCIMFLEGHLKEIYGICFSPNGYHAATGSGDNSCKVWDL
RQRKCIYTIPAHHNLLSAVRFQPTDGNYLLTGAYDNTAKIWSHPGWSPLKTMAGHEGKVM
GLDISPNGQLIATCSYDRTFKLWTSE
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgacgatgatatcccgttgcctaagaaatctcggatttactatggaagcctg
gaagagaaggagagagagaggatcgccaaaggagaaggaggatacctggggagagatgcc
atgaaattgggtgtggaagctgggcacatcaacatatccagtggtgaattctatgatgtt
gaagatcacatcagcgagcggcaggccgaggtgctggcggagtttgagcgcagaaagcga
gcgcggcagattaacgtttctacggacgatgccgaggtgaaggcctgtctgcgtgcgctc
ggagagcccatcacactattcggtgaaggaccagcggaacggcgagaaaggttgcggaat
atcttgtctgtggtgggtgctgatgccttaaagaaaaccgagaagctggaagattcaaag
aaaggccgacaggagcatcagcagacctggtatcatgagggtcccagttccctgaagact
gctcgtctctacattgcaaggttttctctgccaagggctttgaagcgattggaagaggct
agagccaataaagagaccccagacccttcccgaacggctcgacagcaagaacttcacaag
ggtttgagggccctgaataacttctgcagccagattggtgatgaccgtcccatttcgtac
tgtcagttcagccccaactccaagctactggccacggcttcctggagcggactatgtaag
ctgtgggatattcctgactgtcgccttgtacgtacgttgagaggtcacagcacgaatgtg
ggtgccattgtgtttcaccctcaggccaccatctcacttaacgaaaaggactgtaacatg
gcatcgtgtgcagctgacggctcggtcaagctctggaatttggaaagtgatgagcctgta
gccaacatcgaggggcatacagtgagggtggctcgcgttgcctggcatccatcaggcagg
ttcttggggaccacctgctatgaccactcctggcgactatgggatctggaggcccaggag
gagatcctgcaccaggaagggcacagcaagggtgtctatgacattgccttccaccgtgat
ggctctctggtgggaactggtggcctggatgcctttggacgattgtgggacttgcggacg
ggtcggtgcatcatgttcctggagggacatttgaaggagatttacggaatctgcttctct
cccaatgggtatcatgcagcaaccgggagtggagacaacagctgcaaggtttgggactta
cgacagcggaaatgtatctacaccatcccagcgcatcacaacctgctgtcagccgtccgc
tttcagcccacagatgggaattatctgctgactggtgcctacgacaacacagcaaagata
tggagccaccctggctggtcaccgctcaaaaccatggccggccacgaaggcaaagtgatg
ggactggacatttcaccaaacggccaactgattgccacgtgttcttacgacaggaccttt
aagctctggacatctgagtag
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