Leucoraja erinaceus (little skate): 129712169
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Entry
129712169 CDS
T09122
Symbol
grin1a
Name
(RefSeq) glutamate receptor ionotropic, NMDA 1a isoform X1
KO
K05208
glutamate receptor ionotropic, NMDA 1
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri04020
Calcium signaling pathway
leri04080
Neuroactive ligand-receptor interaction
leri04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
129712169 (grin1a)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
129712169 (grin1a)
04082 Neuroactive ligand signaling
129712169 (grin1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
leri04040
]
129712169 (grin1a)
Ion channels [BR:
leri04040
]
Ligand-gated channels
Glutamate (ionotropic)
129712169 (grin1a)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Lig_chan
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Ion_trans_2
Peripla_BP_6
DUF6724
Rap-GAP_dimer
Motif
Other DBs
NCBI-GeneID:
129712169
NCBI-ProteinID:
XP_055516388
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Position
31:27548658..27612294
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AA seq
942 aa
AA seq
DB search
MLLLLPLLVAASLLPAGASAAPKVVNIGAVLSTKKTENTFREAVVLANRKYGAQRIQLNA
TAVTHKPNAIQMALAVCEDLISSQVYAILVSHPPGPSDHLTPTPVSYTAGFYRIPVIGLT
TRMSIYSDKSIHLSFLRTVPPYSHQAQAWFEMMRRFRWGHIILVVSNDHEGRATQKKLET
LLEEKESKNKKRNFENKDHHSYDSRRGPKAEKILQFEPGTTNMTSMLLEAKDLEARVIIL
SANEDDAVTMYKTATLLNMTGPGYVWLVGEREISGRAMQHVPEGVIGLQLIDGKNETAHI
HDAVGIVAQSIHELFEKENITDPPKGCVGNTNIWKTGPLFKRVLLSTKYPEGFTGQVEFN
DEGDRKFSNYSIVNVQKGKLVQIGVYNGTNVLLNDKKIIWPGSELNTPKGFQMSTRLKIV
SIYQEPFVYVKPTTAEGTCQEEFTIHGDPIKKVICTGPNATVPGWPIVPQCCYGFCIDLL
IKLASTPTLNFTYEVHLVEDGKFGTQERVNNSNKKEWNGMMGELLSGLGDMIVAPLTINN
ERAQYIEFSKPYKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYLLD
RFSPFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFAM
IIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELST
MYRHMEKHNYENAADAIQAVRVGKLHAFIWDSAVLEFEASQKCDLITTGELFFRSGFGIG
MRKDSPWKQAVSLAILSFHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFMLVA
GGIVAGIFLIFIEIAYKRHKDARRKQMQLAFAAVNVWRKNLQDRKNGSPEPDPKKKAASF
RSLTSTLTSSFKRRRSSKDTQYHPTDISGQLNLSDPSVSTVV
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgctgctcctgctgccgctgctggtggccgcctctctactcccggccggagccagcgcc
gcgcccaaagtggtgaacatcggcgccgtcctcagcaccaagaagacagagaacaccttc
agggaggcggtggttctagcgaaccgcaaatatggagcgcagcgcatccaactcaacgcc
acggccgtcacacacaaacccaacgctatccagatggcgctggctgtgtgcgaggacctc
atcagcagccaggtgtatgcgatattggtgagtcacccacctggccctagtgaccacctc
acgcccactccagtgtcctacacggctggcttctaccgaatcccagtcattggcttgacc
acacgcatgtccatatattctgacaagagtatccacctgtcgttcctgcgcactgtgcct
ccctattctcaccaagcccaggcctggtttgagatgatgaggcgcttccgttggggacac
atcattctggtggtcagcaacgatcacgagggccgggccacacagaagaagctggagaca
ctgctagaagaaaaggagtcaaagaataaaaaaaggaactttgaaaacaaggaccatcat
tcgtatgacagcaggcgaggaccaaaggctgagaagatcctgcagtttgaaccaggcacc
acaaacatgacatccatgctgctggaagcaaaggatttggaggcaagagtcatcattctg
tctgccaatgaagacgatgccgtgactatgtacaagaccgccaccctcctcaacatgacc
gggcctggttatgtctggcttgttggagagagagaaatatccggcagggccatgcaacac
gttcctgaaggtgtgattggtttgcaacttatcgacggtaagaatgagactgctcacatt
catgatgcggttggtatcgtggctcagtccatccacgagctctttgagaaggagaacatc
actgaccctcccaaaggttgtgtgggaaacaccaacatatggaaaactggacctctcttt
aaaagggtgctgctctccaccaagtacccagaaggcttcacgggacaagtggagtttaac
gatgagggagatcgcaagttttctaactacagcattgtgaatgtgcagaaaggaaaactg
gtgcaaattggcgtttataacggcaccaacgttctgctgaacgacaagaagatcatctgg
ccaggcagcgagttaaacactcccaaaggctttcagatgtcaacaaggttaaagatcgtc
agtatttaccaagagccgtttgtatacgtgaagccaaccacggcagaagggacatgtcag
gaggaattcacgattcatggggatcccatcaagaaggtgatctgtacagggcccaacgcc
actgtgcccggttggcccatcgtccctcagtgttgctacggattctgcattgatctactc
atcaagctcgccagcacccccacgctcaacttcacgtacgaggtccacctcgtcgaagat
gggaagttcgggactcaggagcgagtgaacaacagcaacaagaaggagtggaacgggatg
atgggggagttgctgagcgggctgggtgacatgatcgtggcccctctgaccatcaataac
gagcgcgcacagtacattgaattctccaaaccctacaagtaccaaggactcaccatcttg
gtgaagaaggaaatcccacgcagtacactggactcgttcatgcagccgttccagagcaca
ctctggctgctggtggggctgtcggtgcacgtggtggctgtcatgctctacctcctggac
aggttcagtccgtttgggcgattcaaggtgaatagtgaggaggaagaggaggatgctctg
accctgtcctcagccatgtggttctcatggggagtgctgctgaattctggaattggagaa
ggggctccaagaagcttctcggctcgaatcttgggcatggtttgggctggatttgctatg
atcatcgtcgcctcctacaccgccaacctggcagctttcctggtgttggacagacccgag
gagagaatcactggaattaatgaccccaggctgaggaacccgtcggataagttcatctat
gccacggtgaagcagagctcggtggacatctacttccggcgccaggtggagctgagcacc
atgtaccggcacatggagaaacacaactatgagaacgcggcggacgccatccaggccgtg
cgggtcgggaaactgcacgcattcatctgggactcggcagtgctggagttcgaggcttca
cagaagtgcgacctgatcaccacgggagagctcttcttccggtctggctttggtatcgga
atgaggaaggacagtccgtggaaacaagctgtgtcactcgctatcctgagtttccatgag
aatggctttatggaggatttggacaagacctgggtcaggtaccaggaatgtgactcacgc
agcaatgctccagcaacgctcaccttcgaaaacatggcaggtgtctttatgctggttgct
ggagggattgtggcaggaatattcctgatatttattgagatagcctacaagcgccacaaa
gacgctcgcagaaagcagatgcagctggccttcgccgctgtcaatgtctggaggaagaat
ttgcaggatagaaaaaatggtagcccagaacctgaccctaaaaagaaagcagcatctttt
agatcgctcacttcaacactgacctccagcttcaagagacgtaggtcttccaaagacacg
cagtaccaccctactgatataagtgggcaactgaatctctcagacccttctgtcagcaca
gtagtgtga
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