Leucoraja erinaceus (little skate): 129712315
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Entry
129712315 CDS
T09122
Symbol
ncam1a
Name
(RefSeq) neural cell adhesion molecule 1a isoform X1
KO
K06491
neural cell adhesion molecule
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
leri04514
Cell adhesion molecule (CAM) interaction
leri04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
129712315 (ncam1a)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
129712315 (ncam1a)
04517 IgSF CAM signaling
129712315 (ncam1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
leri04131
]
129712315 (ncam1a)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
leri04515
]
129712315 (ncam1a)
04090 CD molecules [BR:
leri04090
]
129712315 (ncam1a)
00536 Glycosaminoglycan binding proteins [BR:
leri00536
]
129712315 (ncam1a)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
leri00537
]
129712315 (ncam1a)
04091 Lectins [BR:
leri04091
]
129712315 (ncam1a)
Membrane trafficking [BR:
leri04131
]
Exocytosis
Tethering complex
Exocyst complex assembly proteins
129712315 (ncam1a)
Cell adhesion molecules [BR:
leri04515
]
Immunoglobulin superfamily
NCAM1/2
129712315 (ncam1a)
CD molecules [BR:
leri04090
]
Proteins
129712315 (ncam1a)
Glycosaminoglycan binding proteins [BR:
leri00536
]
Heparan sulfate / Heparin
Adhesion molecules of cell surface
129712315 (ncam1a)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
leri00537
]
Others
129712315 (ncam1a)
Lectins [BR:
leri04091
]
I-type lectins (Siglecs)
129712315 (ncam1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
V-set
fn3
FN3_DSCAM-DSCAML_C
Ig_5
C2-set_2
Ig_4
Ig_PDGFR_d4
C2-set_3
Motif
Other DBs
NCBI-GeneID:
129712315
NCBI-ProteinID:
XP_055516613
LinkDB
All DBs
Position
32:5779080..6114108
Genome browser
AA seq
1130 aa
AA seq
DB search
MSPSNTLLTGLLLVATTTAALQVDIMPPQGEVSVGESKFFLCTVTGDASIISWYLPNGDK
IDPNQQRIVVAKVSDISSSLTLYSANVDDAGIYKCVATSKDGNESESTVSVKIYQKLEFR
NAPSPQEFKVGEDAVVICDSVSSPPPTITWKHRGRDVLLRKDARFTMLPNNYLQIHHIKK
TDEGTYRCEGRIASRGEIKFKDIRVIVNVPPSIRAPEMVVNATAHSGRPVTLTCQADGFP
QPQITWQREDIIIKADADKYSLTEDGSELMIHKVGKQDDGEYVCMAQNKAGVYELEITLR
VFVRPEITYVENKTVVEQEDHITLTCEAKGDPTPSITWMKGSHTYRDGEQDSWTRPMKLK
TMDGRIEVHGYARVSSLTLKNIQHTDSGEYVCRAKNPVGHDTKFMYLEVQYAPKLQGTVT
VYTWEGNPVNITCEVLAHPLALVTWLRDGQRLPSSNYSSLKVYSTRTINYLQVTPDSEND
FGPYNCTASNLVGMESKEFILVQAETPSAPAVLDTAPYSSSAQIEVGEPESTGGVPVLKY
LVEWRAQDTDGWLKKNADAKEVLGADNIITIGGLLPETTYSLRLSAINGKGIGDASQIIK
FKTQPIREPSPPKLEEHVLGNGNIYKVNWIRQDDGGSPIRHYLIKYKAKHQVDWKPEMRL
PADSESVILRNLEWNSEYEVYVVAENRQGRSDPGSISFRTSVEPTVIPEANSSNDSSLGT
GAIVGILIVVFLLLLVAVDVTCYFINKCGLLMCIAVNFCGQPGPGSKGKDIEEGKAAFSK
DESKEPIVEVRTEEERTPNHDGGSQTEPNETTPLTEPEHAADTQATVEDMLPSVTTVTTN
SDTITETFATAQNSPTSETTTLTSSAALPATTTPEPSPAANAAPHTPKAAAAAAVSPAVP
QADGAPKVAPLVDLSDAPASSSAPPPPAAKSSSSAAAAPVSNAGPAPPPAAGKAKEASLA
PAGGGGSGGAKPAATAGPGNPVAAAQQQQSPKPTAPAAAKSPEAAAPKPSPVKSPGEAKN
NSASAKKEAATDGSKKPSKGEDFPNDGGTFKTSDIDLAKDVFAALGNSSLPTMGGGKAPD
LAPSATDAVSPPAPEKEEKVPLEEKPKQEGTEVKTIPNEATQTNENESKA
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgtcaccaagcaacactctcctcaccgggctcctcctggtcgccaccactacagctgcc
cttcaggttgatatcatgccacctcaaggtgaagtcagtgtgggagagtccaagtttttc
ctgtgtactgtgaccggggatgccagcatcatttcctggtacctgccaaacggggacaag
atagacccgaatcagcagcgaatcgtcgtggccaaagtaagcgacatatcttccagcctc
accctgtacagcgccaacgtggatgacgccgggatttacaaatgcgttgccacctcgaag
gacggaaatgaatccgagtccaccgttagcgtcaagatctatcaaaagctggagttcagg
aacgctccgtctccgcaggagttcaaggtgggcgaggacgccgtggtcatttgcgactcg
gtcagctcgcccccacccaccatcacctggaaacaccggggcagagacgtgctcctgagg
aaagacgcgcgtttcacgatgttgccgaacaactacttgcaaatccaccacattaagaag
acggatgaaggcacttaccgatgtgaggggagaatcgcctcccgcggagaaatcaaattc
aaggatattcgggtcattgttaatgttccgcccagcatccgcgccccggaaatggtggtg
aacgcgacggctcacagcggcagacccgtcaccttgacctgtcaggcagacggattccca
cagccacagataacctggcaacgagaggatatcatcattaaagcggatgccgacaagtac
tctctgactgaggatgggtctgagctgatgattcacaaggttggaaaacaggacgatggg
gaatatgtctgcatggctcagaataaggccggagtgtatgagctggagattactctacga
gttttcgttaggcctgaaatcacctacgtggagaataagacagtggtggagcaggaggat
cacatcacactcacctgtgaggccaaaggtgaccccacccccagcatcacctggatgaaa
ggcagccacacctaccgggatggtgaacaggattcatggactcggccgatgaaactaaag
accatggatgggagaatcgaggtgcacggctacgcaagagtttcttcactgacgctcaag
aacatacaacacaccgactcgggggaatatgtatgcagagctaaaaacccagtgggccac
gacacaaagttcatgtacctcgaagttcagtacgccccgaagctgcagggcacggtgacc
gtctacacctgggaggggaaccccgtgaatatcacctgcgaggtcctggcccaccccctt
gcgctggtgacctggttgcgggacggccagcggttgccgagctccaactacagcagctta
aaggtctacagcacccgaaccatcaactaccttcaggtcacaccagactcggaaaacgac
tttggtccctacaactgcacagccagcaacctcgttggtatggaatccaaggagtttatt
ctggtgcaagccgagaccccatctgccccggctgtcctggacaccgctccctactcctcc
tcggctcagattgaggttggggaacccgagtccactggtggggtgccagtcctgaagtat
ctcgttgagtggagagcacaggatactgatgggtggctgaagaagaacgcagatgccaag
gaagttctaggtgccgacaatatcatcaccatcggtgggctgcttcccgagaccacgtac
agtctgcggctctccgctatcaatggcaaggggatcggtgacgccagccagatcattaag
ttcaagacacagcctattcgagaaccaagcccacccaaacttgaagaacatgtactggga
aacggaaatatctacaaagtcaactggatcaggcaggacgatggaggttcccccattcga
cattacctgatcaaatacaaagctaaacatcaagttgactggaagcctgagatgagattg
ccagctgacagcgaatccgttattcttagaaacctggagtggaactcggaatatgaagtc
tacgtggtggctgagaatagacagggcaggtcagacccaggttccatctccttccgaacc
tccgtggaacccactgtcattccagaagctaattcatccaatgactccagcctgggaaca
ggggccatcgtggggattctgatcgtggtgttcctcctcctgctggtggccgtggatgtg
acctgctacttcatcaacaagtgtggtctgctcatgtgcatcgccgttaacttctgtggg
cagccggggccagggtccaagggcaaggacatcgaagaggggaaagctgctttctcgaaa
gatgagtcgaaggagccaattgtggaggtgcggactgaggaggaacgcacaccaaatcat
gacgggggcagccagacggaaccaaatgaaaccactccactgacggagcctgagcatgca
gcagatacccaggccactgttgaggacatgttgccttctgtcactacagtaaccactaac
tctgacacaatcactgagacctttgccaccgctcaaaacagtccgacgagtgaaacgacc
acactcacttccagcgctgctctcccggccacgaccaccccagagccgtcacccgccgct
aacgccgcgccgcacacgcccaaggccgccgccgccgccgccgtgtcgcccgccgtgccc
caggcggacggcgcccccaaagtcgcccccctcgtagacctcagcgacgctccggcctct
tcctccgcacctcctcctcctgctgccaagtcctcctcctccgctgccgctgctccggtc
tcgaacgccggccctgcaccgccgcccgcggccggtaaagccaaagaggcttcgctagct
ccggccggcggcggcggcagcggcggcgccaaacccgccgccaccgccggtcccggcaac
ccggttgcggcggcgcagcagcagcagtcacccaagccgaccgctcccgcagcggccaag
agccccgaagccgccgctccgaagcccagcccagtgaagagcccgggggaagcaaagaat
aactccgccagcgcgaagaaggaggctgccacggacggcagcaaaaagccctccaagggc
gaggactttccaaatgacggagggaccttcaagacctcagacattgatcttgcaaaggat
gtttttgcagctcttggcaattcttctcttcccactatgggcggcgggaaggctcctgac
cttgctccctctgctactgatgccgtttcaccacctgctccagagaaggaagagaaggtc
cccttagaggagaagcccaaacaagaagggacagaagtaaagaccattcctaatgaagcc
acacaaacaaatgagaatgaaagcaaagcatga
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