Leucoraja erinaceus (little skate): 129712382
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Entry
129712382 CDS
T09122
Name
(RefSeq) rho guanine nucleotide exchange factor 12-like isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri04270
Vascular smooth muscle contraction
leri04625
C-type lectin receptor signaling pathway
leri04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
129712382
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
129712382
09153 Circulatory system
04270 Vascular smooth muscle contraction
129712382
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
leri04131
]
129712382
Membrane trafficking [BR:
leri04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
129712382
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
Phi6_P8
Motif
Other DBs
NCBI-GeneID:
129712382
NCBI-ProteinID:
XP_055516731
LinkDB
All DBs
Position
32:11356081..11449435
Genome browser
AA seq
1575 aa
AA seq
DB search
MIQSTDGISVIATTLHDRFPIRRLPRQGSILNKDLSPDKKYDKKNLEKSSLYEFDPTESS
SKQKKPRFNCNDHKCLVQRCVIIQRDENGFGLTVSGDNPVFVQSVKEDGAAVRAGVQQGD
RIIKVNGTLVTHSNHVEVVRLIKSGSYVALTVLGRPPGSPQIPLTSVDGDAGGFFFPGQQ
SQMAPNPTFSHHSSSSSCPERITSPMPVAEDNIVHNQKVEILRNMLGTELRQLEQLKEKY
TKNPSPQVLRDQQEVEKHIQQLQEQLSKATGSLQDGSSAGRHSETLSIVERLTEDAGDWE
HDLQSPSENTGSDRSRISFSRAESIISSPSPPCDGHFHRDSLNSSPKISPKDASSFCESM
DVDENQDWDSPSSGLSPPRVAVPIIGAEDDDFDTEAEQTDVQCSCFQTIDLVKSRPAHLV
AFLHHVVSQFEAAPLLCYLYADLYHHTNSKDHRRIFLEFCHLFLEKGSNLKVHVPEWIST
ELERRKGDQSEEMQRSCVQGMQDIVLPDVQTHLEDFRQKRNMGMTIGENELAKLDAERMR
DRVAAEQKERVCAEQLLQKIDEVLATLSPSEEEKSNSVADVILIYMKQLGVKVKDSRNLD
RDRRLRVAFFPKKKPSVKKEKETVKDDEKRKRFQSILDPIRRTSKQDRNAIEKAKLLHQR
QMGPYSRSTSHSDHSERSKSIPFFSEGSDQSAVTGSSGPASANVVHDGISESDTDSAPAT
PATLKMLADNLFIGDSSTSTPKSAFELSTLDQVMEEDRESEKSLEISTPPCTPKPGRRGD
GHGYGAWTEAGSQTHSLSQTEDDQMHLSDVEQDPANWQQLVSRDVLSGLKPHEIKRQEVI
NELFHTERAHIRMLKVLDVIFYQKMKRDGSIPITDVKNIFSNLDEILQLHVSLNEQMRKV
WKRNDNFVVDQIGEDLLSWFSGSEEDKFKRAAATFCSNQPFALELIKSKQKKESRFQAII
QEAQSNPQCRRLQLKDIIPTEMQRLTKYPLLLENIAKNTDPEQHDEKKKVKQAAECCRQI
LNFVNQAVKEAENKQRLEDYQRRLDLSGLKQSDYPLIEEFRSLDLTKRIMIHEGPLTWRV
NKDKTIDLYTLLLEDILVLSQKQDERLVLKCHSKNLAANADTKHTFSPIIKLSAVLVREV
ATDNKAFFVISMSADGAQIYELVAQTVSERKTWQYLITQTSGSIKAPSHHVAPEPPATES
EQEDEENLSTVQQGGSSKATARISNSSDSTQGKEVDDPLAANLSANNKQKHSAIIPTQET
EEQPRYIQDYNNLRRPSAGRPPYRSTELHYSSRARGSMSSIAYSRAEAALINLHSLKRLL
SAHAMGSEDDASDGASVRHLPEDDSVLPSPKQGTDEPSNSTTCCQGGAPNKALQHQLEIA
NGTMEEVEADTRISERTKLPRQFTLEAGHSERIPTEGRGPDLVADDGGDRFYDAPEDHSD
EHRLQGNSSSPNREEEAKSQARSSGNFITLDEFPQTEGSSTDEVEMSTLPSDYSVDCLTQ
STEARESNSATDPCNAEGPEAGIRQLLPTSHVRNQILQLIHSIESDLKYLKELELECHSQ
QVLELSATHEPTGDS
NT seq
4728 nt
NT seq
+upstream
nt +downstream
nt
atgatccagtctactgatggcatatcagtcattgctaccactctccatgacaggtttccc
atcagaagacttcccaggcaaggaagcatactgaacaaggacctgtcgcctgataaaaag
tatgacaaaaaaaacttggaaaaatcatctctgtatgaatttgacccaacagagagctcg
tctaaacaaaagaagcccaggttcaattgcaatgaccataaatgtctagttcagcgctgt
gtcataatccagagagatgaaaatgggtttggcctgacggtcagtggagataacccagtg
tttgtccagtctgtcaaagaggatggagcagctgtgcgtgcaggtgtgcagcagggcgac
agaatcattaaggttaatgggacgctggtcactcattcaaaccatgtggaggtggttcgg
ttaattaaatctgggtcgtacgtggctctcacggtcctgggccgtcctcctggctctccc
cagataccattgacttctgtcgatggagatgctggcggtttctttttccccggtcaacaa
agtcaaatggccccaaatccaactttctcccaccattcttcaagcagcagttgtcctgag
aggatcacaagccccatgcctgtggcggaagataacattgtgcacaaccagaaggttgaa
attctgaggaacatgctgggcacagagttacggcagctggagcaacttaaggagaaatac
acaaagaatccatcgccacaggtacttcgagatcaacaggaggtggagaagcacatccag
caactccaggaacaacttagcaaagctacaggttccttacaggatggctcaagtgcaggt
cgacactcggaaacactatctattgttgaaagactgactgaagatgcaggggactgggag
catgaccttcaatcaccgagtgagaatacagggtccgatagaagtcgcatttcattcagc
cgtgcagagtctataataagtagcccgtctcccccatgtgatggccattttcaccgagac
tccctcaacagtagccccaagatctccccaaaagatgccagcagtttctgtgagagtatg
gacgtcgatgagaaccaggactgggattcgccgtcctccgggctcagcccaccacgggtt
gcagtgccgataattggagcggaggatgatgattttgataccgaagctgagcagactgat
gtccagtgcagctgtttccaaactattgacctggtgaaatcccggccggcacatttggtt
gcatttttacatcatgtcgtgtcgcagtttgaagcagctccattgctctgttacctctac
gccgacctctaccatcacacaaactccaaggatcatcgacgaatttttctcgagttttgc
caccttttccttgagaagggctcgaatctcaaagttcacgtaccagaatggatcagcaca
gaactagaacgtagaaaaggagatcagtctgaggaaatgcaacgtagttgtgtgcagggg
atgcaggacattgtcctgcctgatgttcagacacatctggaagatttcagacaaaaacgg
aatatgggaatgacaatcggagagaatgaattggctaagttagatgcagagcgaatgcgg
gatcgcgtggcagcagaacagaaggagcgggtgtgtgcagagcaactgttacagaagatc
gacgaggtcctagcgactttgtccccgtctgaagaagaaaaaagtaattcggttgcggat
gtgattctcatctatatgaagcagcttggcgtgaaagtgaaggattcgaggaacctggac
agagatcgcaggttacgagttgcattcttcccaaagaagaagccaagtgtaaagaaagaa
aaggagacggtgaaagatgatgagaaaaggaaacgtttccagagcatcctggatcccatc
cggcgcacaagcaaacaggatcgcaacgcgattgaaaaggccaagttactgcatcagagg
caaatgggaccatatagccgatctacttctcactctgaccacagcgagagatcaaaatct
attccattcttcagcgagggaagcgatcagtcagcggtgaccggctcatcaggtccagcg
tcggccaacgttgttcatgatgggatctcagagagcgatacagattctgctcctgcaaca
cctgcgacattgaagatgttagcagacaacttattcattggggattccagcacttctaca
ccaaagtcagccttcgagctatccaccctcgatcaggtgatggaggaggaccgagagtca
gagaaaagtctcgagatttctacacccccgtgtactcctaaaccaggtcgccgaggggat
gggcatgggtatggagcatggaccgaggctggttctcagactcactccctgagccagacg
gaggatgatcaaatgcacttgtcggatgtggagcaggacccagccaattggcagcagctg
gtcagtcgggatgtcctgtctggcttgaaaccgcacgagatcaagaggcaggaagttatt
aacgaacttttccacacggagcgtgctcacatccgaatgctgaaggttctagatgtgatc
ttttaccagaagatgaagagagatggcagcatacccataactgatgtgaaaaacatattc
tccaacctcgatgaaatcctgcagcttcatgtttcattaaatgagcagatgaggaaagtc
tggaaaagaaatgataactttgtggttgatcagatcggcgaggacttgttgagctggttc
agcggttctgaagaggataagtttaaacgggctgcagccactttctgcagcaatcagccc
ttcgctttggaactaatcaagtcaaagcagaagaaagagtcaagattccaggcaatcatt
caggaggcacagagtaatccacaatgccggaggctgcaacttaaagacatcatcccaact
gaaatgcagcgcctgaccaaatacccactactcctggagaacatcgctaaaaatacagat
ccagaacagcacgatgagaagaaaaaggtaaaacaggcagcggaatgctgccgtcagatc
ctgaactttgtgaaccaggctgtaaaggaagctgaaaataagcagcggttggaagattat
cagcgccgcctggacctgtctggcctgaagcagtcagattatccactgattgaggagttc
cggagtctggaccttacaaaacggatcatgattcatgaagggcccctgacttggcgggtg
aataaagataagacaatcgatctctacacacttctgttggaagacatcttggttctatct
cagaagcaggatgaacggttggtgttgaagtgtcacagtaagaatcttgctgccaatgct
gataccaaacacaccttcagccccatcatcaaactctctgctgtgcttgtgcgagaagtt
gcaacagataacaaagcttttttcgtcatctcaatgtcagctgatggtgcacagatctac
gagctggtggcccagacagtgtctgaacggaaaacatggcagtatttaatcacacagaca
tcgggatcgataaaagcaccaagccatcatgtggcccctgagccgcctgccactgagagt
gagcaagaggatgaggagaatctgagcacagtccagcaaggtggatcaagcaaagccaca
gcaaggatatcgaacagcagtgattcaacacaaggtaaagaggttgatgatccgctggca
gcgaatctctcagcgaacaacaagcagaaacacagtgcgatcatccccacgcaggagaca
gaggagcagcccaggtacatacaggactataacaacctccgaagaccctctgccgggcgg
cccccttacagaagcactgagttgcactattccagtcgggctcggggttcaatgtcatca
atcgcttactcaagagctgaggctgcactaataaaccttcactcattgaagcgattgctg
tcggctcatgcgatgggttcagaagatgatgccagtgatggagcatctgttcggcacctt
ccagaagatgacagtgtactgccgtcaccaaagcaggggactgatgagccatccaacagc
acgacgtgttgtcaaggtggggcacccaacaaggcactgcagcatcagctggagatagcc
aatgggacaatggaggaagtagaggctgacacaagaattagtgaaaggactaaacttccc
cgtcagttcacactggaagcgggtcacagcgaacgtatcccaactgaaggacgtggacca
gacttggtagctgacgatggtggagataggttctacgacgccccagaagatcactcggat
gagcatcgattacaagggaacagttcaagtccaaatagagaagaggaggcaaagtcacaa
gcccgttcatcagggaactttataaccctggatgaatttccacagacagaaggaagctcc
actgatgaagtagaaatgtctacacttccatctgattattctgtggattgtctcacccag
agcacagaggcgagggaaagcaacagtgcaactgatccttgtaatgcagaaggcccagag
gcaggaattagacagctgcttcctacatcacatgtgcgcaaccaaatcctccaattaatt
catagtatcgagtctgatctgaaatatttaaaggagttggagctggaatgccacagtcag
caggtcctggagctctcagctacgcatgagccaacaggagatagttaa
DBGET
integrated database retrieval system
