Leucoraja erinaceus (little skate): 129712387
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Entry
129712387 CDS
T09122
Symbol
smfn
Name
(RefSeq) small fragment nuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
129712387 (smfn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
leri03019
]
129712387 (smfn)
03009 Ribosome biogenesis [BR:
leri03009
]
129712387 (smfn)
Messenger RNA biogenesis [BR:
leri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
129712387 (smfn)
Ribosome biogenesis [BR:
leri03009
]
Eukaryotic type
Pre-60S particles
RNases
129712387 (smfn)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
Motif
Other DBs
NCBI-GeneID:
129712387
NCBI-ProteinID:
XP_055516751
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All DBs
Position
32:12500607..12508652
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AA seq
283 aa
AA seq
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MPEGRLAAMLMLRGHRAALKAKNLPLVTAIQFPRRSHFTERSVGRPHSPSPHPPFASGPA
ARLLPRRLTTMAEESMAKRMVWVDLELTGLDVEKDKIIEMACIITDSELNILAEGPHLIV
NQPNELLDGMSEWCVEHHGKSGLTQAVKDSKISQQQAEYEFLSFVRQHIPPGHCPLAGSS
VHADKKFLDKYMPQFMEHLHYRIIDVSTIKELCRRWYPDEFENAPKKKFSHRALDDIRES
IKELQYYRMHVFKESKAEEKKRKTHFENGDKTKRESLNQEANN
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atgccggagggccgattggccgccatgctgatgctgcgtggtcacagggccgctcttaaa
gctaagaacttaccccttgtcaccgccattcagtttccccgccgcagccatttcaccgag
cgctcagtcggccgccctcactcgccttctcctcatccacccttcgcctctggaccggca
gctcggctgttgccccgacgtttgaccaccatggcagaggagagtatggcaaagaggatg
gtctgggtggacctggagctgaccggattggatgtagaaaaagacaaaatcatagaaatg
gcttgcattataaccgattcagaattgaatatattggctgagggtccacacttgattgtt
aaccaaccaaatgagctcctggatggcatgtcagaatggtgtgtggaacaccatggaaag
tcgggtctcacacaggcagtgaaggacagcaaaatcagccagcagcaagcagaatatgaa
ttcctgtcctttgtacgtcagcatatccctccgggccactgtcctcttgcaggaagttca
gtccatgctgacaaaaaatttctcgacaagtatatgccacagttcatggagcacttgcat
tacagaataattgacgtcagcaccatcaaggaattgtgcagacgctggtacccagatgaa
tttgaaaatgcaccaaagaagaaattttcccatagagcgttggatgacatccgtgagagc
atcaaagagctgcaatattataggatgcatgtatttaaagaaagcaaagcagaggagaag
aaaagaaaaacacacttcgaaaatggtgataaaaccaagcgagagagtctgaatcaagag
gctaataactaa
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