KEGG   Leucoraja erinaceus (little skate): 129712387
Entry
129712387         CDS       T09122                                 
Symbol
smfn
Name
(RefSeq) small fragment nuclease
  KO
K13288  oligoribonuclease [EC:3.1.-.-]
Organism
leri  Leucoraja erinaceus (little skate)
Pathway
leri03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:leri00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    129712387 (smfn)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:leri03019]
    129712387 (smfn)
   03009 Ribosome biogenesis [BR:leri03009]
    129712387 (smfn)
Messenger RNA biogenesis [BR:leri03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     129712387 (smfn)
Ribosome biogenesis [BR:leri03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    129712387 (smfn)
SSDB
Motif
Pfam: RNase_T Rv2179c-like
Other DBs
NCBI-GeneID: 129712387
NCBI-ProteinID: XP_055516751
LinkDB
Position
32:12500607..12508652
AA seq 283 aa
MPEGRLAAMLMLRGHRAALKAKNLPLVTAIQFPRRSHFTERSVGRPHSPSPHPPFASGPA
ARLLPRRLTTMAEESMAKRMVWVDLELTGLDVEKDKIIEMACIITDSELNILAEGPHLIV
NQPNELLDGMSEWCVEHHGKSGLTQAVKDSKISQQQAEYEFLSFVRQHIPPGHCPLAGSS
VHADKKFLDKYMPQFMEHLHYRIIDVSTIKELCRRWYPDEFENAPKKKFSHRALDDIRES
IKELQYYRMHVFKESKAEEKKRKTHFENGDKTKRESLNQEANN
NT seq 852 nt   +upstreamnt  +downstreamnt
atgccggagggccgattggccgccatgctgatgctgcgtggtcacagggccgctcttaaa
gctaagaacttaccccttgtcaccgccattcagtttccccgccgcagccatttcaccgag
cgctcagtcggccgccctcactcgccttctcctcatccacccttcgcctctggaccggca
gctcggctgttgccccgacgtttgaccaccatggcagaggagagtatggcaaagaggatg
gtctgggtggacctggagctgaccggattggatgtagaaaaagacaaaatcatagaaatg
gcttgcattataaccgattcagaattgaatatattggctgagggtccacacttgattgtt
aaccaaccaaatgagctcctggatggcatgtcagaatggtgtgtggaacaccatggaaag
tcgggtctcacacaggcagtgaaggacagcaaaatcagccagcagcaagcagaatatgaa
ttcctgtcctttgtacgtcagcatatccctccgggccactgtcctcttgcaggaagttca
gtccatgctgacaaaaaatttctcgacaagtatatgccacagttcatggagcacttgcat
tacagaataattgacgtcagcaccatcaaggaattgtgcagacgctggtacccagatgaa
tttgaaaatgcaccaaagaagaaattttcccatagagcgttggatgacatccgtgagagc
atcaaagagctgcaatattataggatgcatgtatttaaagaaagcaaagcagaggagaag
aaaagaaaaacacacttcgaaaatggtgataaaaccaagcgagagagtctgaatcaagag
gctaataactaa

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