KEGG   Leucoraja erinaceus (little skate): 129712534
Entry
129712534         CDS       T09122                                 
Name
(RefSeq) collagen alpha-1(XXV) chain
  KO
K24356  collagen type XXV alpha
Organism
leri  Leucoraja erinaceus (little skate)
Brite
KEGG Orthology (KO) [BR:leri00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:leri00536]
    129712534
Glycosaminoglycan binding proteins [BR:leri00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   129712534
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 129712534
NCBI-ProteinID: XP_055517409
LinkDB
Position
1:93813746..94441956
AA seq 673 aa
MPKASTERGCKRQVEAAGTARSRAPALGGMCWTLPSVLWSVLSLGSVAFCICLSVKTSQL
EERILDLESVKGDVLLPPLSPSSTADRMRVLVQERVDQLLSQPRFHEGEARRRSAREASA
ECNCPAGPPGKRGRRGRNGEPGPPGPPGPKGDKGDQGDQGPRMAFPYPRVNHGFLSADQQ
FIKRRLMKGDQGQAGQPGPPGPPGPPGPRGPPGDTGKDGPRGMPGVPGETGSRGEPGLVG
PQGPPGQKGSVGFSGVPGVHGQKGDLGGTGKVGDPGTKGEVGDQGEKGVAGPKGDKGGKG
DPGSSAAGIKGEPGETGLHGQKGEPGLPGLPGLPGIKGEPGFWGPQGEPGLPGLPGTKGE
KGDGGPPGRGEIGLSGSSGPKGEPGDLGMPGRHGVKGDHGKDGESGPMGPRGPPGQKGEQ
GVTEIIDYNGNIHQALQGPPGPQGSPGMQGSKGDMGSPGSYGVPGVQGPKGSKGDIGISG
DKGSMGLPGLSGINGEKGEKGEKGDHGLAGPQGTSIAGPPGPTGSQGPPGPMGEPGLNGV
KGGKGEPGQKGDRGPLGLPGASGLDGQPAQRGMDGTVGPAGPAGPKGDRGEKGGVGNPGT
RGPTGLPGLDGDPGLDGFSGPKGDRGERGEKGEKGKKGKKGPKGEKGEQGAPGLDAPCPL
GPDGLPMPGCWQK
NT seq 2022 nt   +upstreamnt  +downstreamnt
atgccgaaagcgtccacggagaggggttgcaagcggcaggttgaagcagccgggacggcg
cggagccgggcgccggcactcggggggatgtgctggactctgcccagcgtcctgtggtct
gtgctgtcgctgggctcggtggctttctgcatttgcctcagcgtgaaaacttcgcagcta
gaagagcggatcctcgacctggaaagtgtgaagggagatgtcttgctgcctcctctcagc
ccgagttcgacggcggatcggatgcgagtgctcgtccaggagagagtggatcagctcctg
agccagccgagattccacgaaggcgaagcgagacgccggagcgccagggaggcatccgcc
gagtgtaactgtcctgcaggacctcctggaaaacgcggcaggaggggcagaaatggggaa
cctggacctcccggtccacccggtccaaaaggtgacaagggtgatcaaggcgatcagggg
ccgaggatggcgtttccatacccaagagtcaatcatgggttcctctcggctgatcagcag
tttattaagcgacgtctcatgaagggtgatcaaggtcaagctggccaacctggaccgcct
gggcctcctggtcctccaggcccacgtggtcctccgggtgacacggggaaggatggtcct
cgaggaatgcctggagtacctggagaaacggggtcaagaggtgaacctggattggtggga
cctcagggaccaccaggacaaaaggggtctgtgggtttcagtggagtacctggcgttcac
ggacagaagggtgatcttggtgggactgggaaggttggtgatccaggtaccaagggcgaa
gtaggagatcaaggtgagaagggcgtcgctggtccgaaaggtgacaaaggcggaaagggt
gaccctggatcatcagctgcgggaataaagggggaaccaggtgaaacaggacttcatgga
caaaagggtgaaccaggtcttcctgggcttcctggactccctgggataaagggggagcca
ggcttttggggtcctcagggagaacccgggttgcctgggttaccaggaacaaagggagag
aaaggagatggagggccacctggaagaggtgaaatcggcctgtctggatcttcaggcccc
aagggtgagccgggtgatctagggatgccgggccggcacggagtgaagggtgaccatgga
aaagatggagaatcggggcctatgggacccagaggcccacctggtcagaagggtgaacaa
ggagtaaccgagataatagattacaatggcaacatccaccaggcactacagggtccacca
ggccctcaaggatctccaggaatgcaaggatcaaagggagacatggggagtcctggatca
tatggagtcccaggagtacagggccctaaaggttctaaaggtgacattggcatttcagga
gataaaggaagcatgggcctacctggattatctggtattaatggagaaaagggagaaaaa
ggagaaaaaggagatcatggattggctggtccacaaggcacttctattgccggaccccca
ggccccactggctcacaaggcccaccaggtccaatgggtgaaccagggttgaatggtgtt
aaaggagggaagggtgaaccaggtcaaaaaggtgacagaggaccccttggtctcccaggt
gcctctggcttagatggacagccagcacagcggggcatggacggtactgtggggcccgca
ggcccagctggtccaaagggagacagaggagaaaaaggaggtgttggtaaccctgggact
agaggaccgacaggtttgcctggccttgatggagatccagggctagatggattttccggt
ccgaaaggagatagaggagagaggggagaaaagggggaaaagggaaagaaaggcaaaaaa
gggcctaagggggagaaaggagaacagggtgcccctggattagatgcaccttgcccattg
ggtccggatggattgccgatgccaggatgttggcagaagtga

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