Leucoraja erinaceus (little skate): 129712534
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Entry
129712534 CDS
T09122
Name
(RefSeq) collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
leri
Leucoraja erinaceus (little skate)
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
leri00536
]
129712534
Glycosaminoglycan binding proteins [BR:
leri00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129712534
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
129712534
NCBI-ProteinID:
XP_055517409
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All DBs
Position
1:93813746..94441956
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AA seq
673 aa
AA seq
DB search
MPKASTERGCKRQVEAAGTARSRAPALGGMCWTLPSVLWSVLSLGSVAFCICLSVKTSQL
EERILDLESVKGDVLLPPLSPSSTADRMRVLVQERVDQLLSQPRFHEGEARRRSAREASA
ECNCPAGPPGKRGRRGRNGEPGPPGPPGPKGDKGDQGDQGPRMAFPYPRVNHGFLSADQQ
FIKRRLMKGDQGQAGQPGPPGPPGPPGPRGPPGDTGKDGPRGMPGVPGETGSRGEPGLVG
PQGPPGQKGSVGFSGVPGVHGQKGDLGGTGKVGDPGTKGEVGDQGEKGVAGPKGDKGGKG
DPGSSAAGIKGEPGETGLHGQKGEPGLPGLPGLPGIKGEPGFWGPQGEPGLPGLPGTKGE
KGDGGPPGRGEIGLSGSSGPKGEPGDLGMPGRHGVKGDHGKDGESGPMGPRGPPGQKGEQ
GVTEIIDYNGNIHQALQGPPGPQGSPGMQGSKGDMGSPGSYGVPGVQGPKGSKGDIGISG
DKGSMGLPGLSGINGEKGEKGEKGDHGLAGPQGTSIAGPPGPTGSQGPPGPMGEPGLNGV
KGGKGEPGQKGDRGPLGLPGASGLDGQPAQRGMDGTVGPAGPAGPKGDRGEKGGVGNPGT
RGPTGLPGLDGDPGLDGFSGPKGDRGERGEKGEKGKKGKKGPKGEKGEQGAPGLDAPCPL
GPDGLPMPGCWQK
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaagcgtccacggagaggggttgcaagcggcaggttgaagcagccgggacggcg
cggagccgggcgccggcactcggggggatgtgctggactctgcccagcgtcctgtggtct
gtgctgtcgctgggctcggtggctttctgcatttgcctcagcgtgaaaacttcgcagcta
gaagagcggatcctcgacctggaaagtgtgaagggagatgtcttgctgcctcctctcagc
ccgagttcgacggcggatcggatgcgagtgctcgtccaggagagagtggatcagctcctg
agccagccgagattccacgaaggcgaagcgagacgccggagcgccagggaggcatccgcc
gagtgtaactgtcctgcaggacctcctggaaaacgcggcaggaggggcagaaatggggaa
cctggacctcccggtccacccggtccaaaaggtgacaagggtgatcaaggcgatcagggg
ccgaggatggcgtttccatacccaagagtcaatcatgggttcctctcggctgatcagcag
tttattaagcgacgtctcatgaagggtgatcaaggtcaagctggccaacctggaccgcct
gggcctcctggtcctccaggcccacgtggtcctccgggtgacacggggaaggatggtcct
cgaggaatgcctggagtacctggagaaacggggtcaagaggtgaacctggattggtggga
cctcagggaccaccaggacaaaaggggtctgtgggtttcagtggagtacctggcgttcac
ggacagaagggtgatcttggtgggactgggaaggttggtgatccaggtaccaagggcgaa
gtaggagatcaaggtgagaagggcgtcgctggtccgaaaggtgacaaaggcggaaagggt
gaccctggatcatcagctgcgggaataaagggggaaccaggtgaaacaggacttcatgga
caaaagggtgaaccaggtcttcctgggcttcctggactccctgggataaagggggagcca
ggcttttggggtcctcagggagaacccgggttgcctgggttaccaggaacaaagggagag
aaaggagatggagggccacctggaagaggtgaaatcggcctgtctggatcttcaggcccc
aagggtgagccgggtgatctagggatgccgggccggcacggagtgaagggtgaccatgga
aaagatggagaatcggggcctatgggacccagaggcccacctggtcagaagggtgaacaa
ggagtaaccgagataatagattacaatggcaacatccaccaggcactacagggtccacca
ggccctcaaggatctccaggaatgcaaggatcaaagggagacatggggagtcctggatca
tatggagtcccaggagtacagggccctaaaggttctaaaggtgacattggcatttcagga
gataaaggaagcatgggcctacctggattatctggtattaatggagaaaagggagaaaaa
ggagaaaaaggagatcatggattggctggtccacaaggcacttctattgccggaccccca
ggccccactggctcacaaggcccaccaggtccaatgggtgaaccagggttgaatggtgtt
aaaggagggaagggtgaaccaggtcaaaaaggtgacagaggaccccttggtctcccaggt
gcctctggcttagatggacagccagcacagcggggcatggacggtactgtggggcccgca
ggcccagctggtccaaagggagacagaggagaaaaaggaggtgttggtaaccctgggact
agaggaccgacaggtttgcctggccttgatggagatccagggctagatggattttccggt
ccgaaaggagatagaggagagaggggagaaaagggggaaaagggaaagaaaggcaaaaaa
gggcctaagggggagaaaggagaacagggtgcccctggattagatgcaccttgcccattg
ggtccggatggattgccgatgccaggatgttggcagaagtga
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