Leucoraja erinaceus (little skate): 129712912
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Entry
129712912 CDS
T09122
Symbol
cdhr1a
Name
(RefSeq) cadherin-related family member 1 isoform X1
KO
K16501
cadherin-related family member 1
Organism
leri
Leucoraja erinaceus (little skate)
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
leri04515
]
129712912 (cdhr1a)
Cell adhesion molecules [BR:
leri04515
]
Cadherins
Cadherin related
129712912 (cdhr1a)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
RibLong
Cadherin_2
Cadherin_4
Motif
Other DBs
NCBI-GeneID:
129712912
NCBI-ProteinID:
XP_055517641
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Position
34:complement(3298611..3330476)
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AA seq
856 aa
AA seq
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MLNFPLVHADYAPYFYDNAPNSTNGNMAMLSIPEDTLIGSHVYTLNGTDLEGNSVAYDMT
FEPGSKNYFSVDPQTGKVTLVEELDREKEDEIEVLVSISDGINKVVETVRILVTDANDES
PEFIKTPYIINVPENTPPGASIFKVYAVDKDNGSGGSVTYFLQNMRKSKFTIDRYSGVIQ
IKPSATLDFEKSRVHFVTVITKDGGGKHRGRHQICSSTATVTINVEDVQDTPPVFTGIPY
FGYVYEDTELGSEILSVVAHDGDRGNPNPIRYSIAHGNDGSFEINNTSGVITLLQSTEHL
QKDVYKLLVQASEVSPEVDMLAFMTAMVTIQVVDLNNHQPTFYGEHGPQSQFEITMPEHP
PEGEILRGLKITVKDYDQGPNSQFILTLVGAGGRFRVIPQTVLSEAQVTLIVENSTAIDY
EKSQMLTFQLVAAESDTPEQFSSTADIIVHIVDTNDNTPEFTSAFYLARIPENSPGGSPV
ICVSANDPDSEMWGEVKYSIHGAGADLFLIHPSTGVIYTQPWAELDAEEQSKYNFHIKAD
DVEGKHSLAEVFVTVLDVNDHYPEFTENVLDKVMIIGSPVKVEAKDEDAEEPNNIVDYSI
MQGDPANVFDIDQATGEIMLKSYIRSLEVIHNITKTRGGHWSLVVQAKDRGSPSFSTTAV
VRIDITEETAGNGHLADFLLQSKDNPMQVVGVIAGIIGFFVVLTVMISSVMFWRNKKSNR
IGPVRRIIKRRSGWKLQARRSKWFQSKKSTQTRGNFMTSTDDPHLQTVSGLNNRPALQLA
LPRAPMLPPPISTHPTRLHKPKRDIPSVSGTISPKRSFVPQQSKGKTGSNINNALVSELK
MRLERKMNEDASRLYL
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atgttgaattttccgctagttcacgcagattatgcgccttatttctacgacaatgctccc
aacagcaccaacggaaacatggctatgttgagcattcctgaagacacacttataggatcc
catgtatacactttaaacggtactgatctggaagggaattctgttgcatatgacatgaca
tttgaaccaggatcgaaaaactatttttcagtggatccacaaaccgggaaagtcactttg
gtggaagagctggatagagagaaagaagatgaaattgaggtgctggttagcatttctgat
ggtattaataaggttgtcgaaacagttcggatacttgtaacagatgctaatgatgagagc
ccggagtttattaagacaccttacatcattaatgtacctgagaacacaccacctggggcc
agtatcttcaaggtgtatgctgtggacaaagacaatggatctggaggcagtgtcacctac
tttctgcagaacatgcgcaagagcaaattcaccattgaccgatacagtggagttattcaa
ataaagcccagcgcaactttggatttcgagaaatccagggttcattttgtcaccgtgatc
accaaggatggtggggggaaacacagaggaaggcatcagatctgctcatcaactgccaca
gtaacaattaacgttgaagatgtgcaggacacccctcctgtattcaccggcatcccgtat
tttggatatgtgtatgaagacacagagctcggttcagaaatacttagtgtggtggctcac
gatggagacagggggaacccgaacccaatccgttactcgattgcacatggcaatgatgga
tcctttgaaataaataatacaagtggggtcatcactcttctgcaaagtacagaacatctt
cagaaggatgtttacaaactattagttcaggcttcagaagtcagcccagaggtggacatg
ctggcgtttatgacagccatggtgaccatccaagtggtggatctcaacaatcaccagccc
accttctatggtgagcacggaccccagtcgcaattcgagatcacaatgcctgaacaccca
ccagagggagagatactgcgtggactgaaaataacagtgaaagattatgaccaggggcca
aactcacaattcatcctcacgttagtgggcgcaggtggaagattcagagttattccccaa
accgtcctgagtgaagcccaagtcacgctaatagtggagaactcgactgccattgactac
gagaaatcccaaatgttgacttttcagctcgtcgctgctgagtcggataccccagaacag
ttcagttcaacagccgacattatcgttcacatcgtggatacaaacgacaacactcctgaa
ttcacatcagctttctacctcgcacggattcctgagaactcacccgggggctctcctgtt
atctgtgtctcagcaaacgaccccgactcagaaatgtggggagaagtcaagtactctata
catggagcgggagcagatctatttctgattcacccaagcacaggtgttatttacactcag
ccctgggctgagctggatgctgaagaacagtccaagtacaattttcacatcaaagcagat
gatgtggaagggaagcacagcttggccgaggtctttgtaacagttctcgatgttaacgac
cactatccagaatttacagagaacgttttggacaaggttatgattatcggatcacctgta
aaagttgaggccaaagacgaggatgccgaggaaccgaacaacattgtggactactcgata
atgcaaggagacccagccaatgtcttcgacatcgaccaagccacaggggagatcatgttg
aagtcctacatcaggtccctggaggtcattcacaacatcaccaagaccaggggtggccac
tggtcactagtcgtgcaagctaaagatagaggctcgccttccttcagcaccacagcggtc
gttagaatcgacatcactgaggagactgctggcaatgggcatttggctgactttttgttg
caatctaaagataacccaatgcaagtggtgggagtgatagctggaatcattggctttttt
gtggttctgactgtcatgatttcatcggtgatgttctggcggaacaagaagtccaataga
attggcccagtgagacgcatcataaagcgacggtcaggctggaagctgcaggcacgacga
tcaaagtggttccagagcaagaagtcgacccaaacacgaggcaacttcatgacttcaacg
gacgacccacacctacagactgtcagcggcctcaacaaccgcccagcacttcaactggct
ttgccaagagcacctatgcttccaccccccatatctacgcacccaaccagactccataag
cccaaacgagacatcccatccgtgtccgggaccatcagtcccaaaagaagctttgtcccc
cagcaatcaaagggcaagacgggctcgaacatcaacaacgcactggtgtcagaactcaaa
atgcgtctggagagaaaaatgaatgaagatgcttccaggttgtacttgtag
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