Leucoraja erinaceus (little skate): 129712973
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Entry
129712973 CDS
T09122
Name
(RefSeq) collagen alpha-1(XIII) chain-like isoform X1
KO
K16617
collagen type XIII alpha
Organism
leri
Leucoraja erinaceus (little skate)
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
leri00536
]
129712973
Glycosaminoglycan binding proteins [BR:
leri00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129712973
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
129712973
NCBI-ProteinID:
XP_055517769
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Position
34:8745449..8946060
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AA seq
579 aa
AA seq
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MGSPGPKGEKGYIGLKGEKGLHGPKGDKGQRGDSALTEFPGTSLAALRLNQILTVKFTTP
RLNILPPADQIIRRLYLKGEQGQANCSPGPPGPPGPKGPPGDSGKSGADGLPGKSGDSGQ
PGRDGIKGQPGLQGKPGIPGLPGRKGEVGELGLPGPAGLPGSVGRKGDQGDVGQKGDPGE
MGRAGDRGAKGEFGRPGIPGKPGTKGAFISTAPVLKGEPGKTGSPGEKGEPGEAGPRGLP
GKRGFRGESGIPGIEGAPGQKGEGGEPGSAAGGIKGDSGLPGPVGPPGQKGELGERGVQG
LPGMKGEAGKTEIIDYNGNINEALQGPPGVPGMPGLPGQKGEIGLPGVPGLDGEKGPRGK
PGDFGPSGPQGPLGPEGTKGEAGIMGFPGPKGAKGDTGMVGSPGLDGPTGEKGERGEPGL
QGPPGLPGPVGLPGSTVIGPPGIPGPEGPPGPKGPHGFSGTKGEPGSEGFKGDRGDRGPL
GLPGASGLDGQPGPLGVPGPAGPKGERGDKGDMGISGPTGPRGLPGSLGPTGEKGGRGEK
GKRGAKGPKGDKGDQGVPGLDAPCPLGEDGLPVQGCWNK
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgggctcacctggtccaaaaggtgaaaagggatacattggtcttaaaggagaaaagggt
ctacatggtccaaaaggagacaagggtcaacgtggagattcagcattgactgagttccct
gggacttcactagcagcactgcggctaaatcagatcctgactgtgaagtttacaacacct
cgactgaatatactaccacctgctgaccagatcatcagacgtctctatctcaagggtgaa
caaggacaagcaaactgctccccaggaccacctggacctccgggcccaaaaggacctcca
ggggattcaggaaaatcaggggctgacggtttaccgggaaaatctggagacagtggacaa
cctggaagagacggaattaaggggcaaccaggattgcaaggaaaaccagggatacccggg
ctcccaggaagaaagggtgaggttggtgaattagggcttcctggtccagccggattaccg
ggatccgtaggccgaaagggagaccagggagatgtcggacaaaagggagatcctggcgaa
atgggccgggcaggcgatagaggagcaaagggagaatttggaagacctggtatcccagga
aaacctggaacaaagggtgcatttatttcaactgctcctgtgttaaagggagagccaggg
aagactggatcacctggagagaagggggagccaggagaagctggtccacgtggccttccc
ggaaagagagggttcaggggtgaaagtggcatacctgggattgaaggtgccccagggcag
aaaggggaaggaggagagccaggatctgctgctggtggaattaagggtgattcaggcctg
cctggacctgtaggccctccaggtcagaagggtgaattgggtgaacgaggagttcagggc
cttccaggtatgaaaggcgaagcaggaaaaactgagataattgactataatggtaacatc
aatgaagcactccagggacctccaggagttccaggaatgccaggtctaccaggccagaag
ggtgaaataggcctaccgggggtacctggacttgatggagaaaagggcccccgcgggaag
ccaggagactttggaccctcaggtccgcaagggccactgggacccgaaggaaccaagggc
gaggcaggaattatgggattccctggtcccaaaggagccaaaggagataccggaatggtc
ggatcacctggtttagatgggcccacaggtgaaaaaggagaaaggggagagccaggatta
caaggccctcctggattgccaggccctgttggacttccaggctcaactgttattgggccg
ccaggaatacctgggcctgagggccccccaggtccaaagggtcctcatggcttttcaggg
acaaagggcgagcctgggtcagaaggcttcaaaggtgatagaggtgatcgaggtcccctg
ggactgcctggtgcttctggcttagatggacagcctggaccactgggtgtaccagggcca
gcaggaccaaaaggagaaaggggcgataagggagacatgggaatttcaggaccaacggga
ccacggggattacctggttcactaggaccaacgggtgaaaagggaggccggggggagaag
ggaaagagaggtgctaaagggcctaaaggggataagggagaccaaggagtgcctggatta
gatgcaccttgtccattgggtgaagatggtttacctgtacagggctgttggaataaatga
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