Leucoraja erinaceus (little skate): 129713338
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Entry
129713338 CDS
T09122
Name
(RefSeq) cytoplasmic dynein 1 intermediate chain 1 isoform X1
KO
K10415
dynein cytoplasmic 1 intermediate chain
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri04145
Phagosome
leri04814
Motor proteins
leri05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
129713338
09142 Cell motility
04814 Motor proteins
129713338
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
129713338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
leri03036
]
129713338
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
leri04812
]
129713338
Chromosome and associated proteins [BR:
leri03036
]
Eukaryotic type
Centromeric chromatin formation proteins
SAC (spindle assembly checkpoint) factors
Motor proteins
Dynein complex
129713338
Cytoskeleton proteins [BR:
leri04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Dyneins
129713338
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_Prp19
WDR55
WD40
Beta-prop_EML
Dynein_IC2
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_HPS5
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_WDR19_1st
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_2nd
Beta-prop_NUP159_NUP214
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_IP5PC_F
ANAPC4_WD40
Beta-prop_SPT8
CFAP43_N
Rrn6_K-rich
Motif
Other DBs
NCBI-GeneID:
129713338
NCBI-ProteinID:
XP_055518300
LinkDB
All DBs
Position
2:104101643..104252273
Genome browser
AA seq
664 aa
AA seq
DB search
MVHQCPANCRAANIGGFNMSDKSDLKAELERKKQRLAQIREEKKRKEEERKKKEAELQQK
KEVPPEDSDLDRKRRETEALLQSIGIAPEPALVQPLQIVTWDACYFHYLVPTPMSPSSKS
VSTPSEAGSQDSVDGGHGGRALQWDTDPSVLQLQSDSDLGRRLPKLVISKITQVDFLPRE
VVSYSKETQTPIAHEPEEDEDGEMPELNLGTESELENQEAKAESKEASPRELTEEEKQQI
LHSEEFLIFFDHNIRIIERALAEDSSLFFDYGGKELDEKEGDFQSGLNLSFNRQFYDEHW
SKHRVVTCLDWSLQYPELMVASYCNNEDAPHEPDGVALVWNMKFKKNTPEYIFHCQSPVM
SVCFARFHPNLVISGTYSGQIVLWDNRSHRRTPVQRTPLSAAAHTHPVYCVNVVGTQNAH
NLITVSTDGKMCSWSLDMLTQPQENMELVYNKSKPVAVTSMAFPTGDVNNFVVGSEEGMV
YTACRHGSKAGIGEMFEGHQGPVTGINCHMAVGQIDFSHLFVTSSFDWTVKLWSTKHNKP
LYSFEDNADYVYDVMWSPVHPALFACVDGMGRLDLWNLNNDTEVPTASATVEGTSALNRV
RWASTGREVAVGDSEGHVWVYDVSEQLAVPHSDEWACFARTLVEIRANRADAEEGSVVEL
SAQL
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggtgcaccaatgtccagctaactgcagggctgccaacattgggggcttcaacatgtca
gacaagagtgatttgaaagcagaactggagcgaaaaaagcaaagactggctcagatacgc
gaagagaaaaaaagaaaagaagaagaaaggaaaaagaaagaggctgagttgcaacagaag
aaagaagttccccctgaggactctgatcttgatcgcaaacgcagggagacagaggctttg
ctgcagagcataggcatagccccagagccagcactagtgcagcctttgcaaatagtaaca
tgggatgcctgttattttcattatttagtcccaacccccatgtctccctcctcgaaatca
gtgagcacgcccagtgaagctggaagccaggattcggtagatggtggacatggtggaaga
gcactacaatgggatacggatccttctgttctgcagctgcagtctgactcagatcttggc
cgccgcttgcctaaacttgtgatttcgaaaattacccaagttgattttttacctcgcgag
gtggtgtcgtactccaaagagacccaaacgccaattgctcacgaaccagaagaagatgag
gatggtgagatgcccgaactgaatctcggaactgaatcggagttggagaaccaagaggcg
aaagctgaaagtaaagaagcttctccaagagaacttaccgaagaggagaagcaacaaatt
cttcattcagaggaatttttgattttcttcgaccataacatacgcatcatagaacgtgct
cttgctgaagattccagcctcttctttgactatggtggcaaagaattggatgaaaaagaa
ggagattttcaatctggtctaaacctttcatttaatcggcaattttatgacgaacattgg
tcaaaacatcgtgtcgtgacctgtttagattggtcacttcagtatcctgaactgatggtt
gcttcttattgtaacaatgaagatgccccacatgagccggatggggtagctttggtttgg
aatatgaaatttaagaaaaacactccagaatatatcttccactgtcagtctccagtaatg
tcggtctgctttgcccgatttcacccaaacctggtaattagtggtacctactctggacaa
attgttctctgggacaaccgcagccaccgccgaactccagttcaacgtactccactttct
gctgctgctcatactcatcctgtgtattgtgtgaatgtcgttgggacgcaaaatgctcat
aatctgattacagtttccacagatggaaaaatgtgctcctggagcctggatatgcttact
caaccacaagaaaatatggagttggtatacaacaagtcaaagcccgtagctgtcactagc
atggcttttccaacaggagatgtcaataattttgttgtaggcagcgaggagggtatggtt
tatactgcatgtcgccatggcagtaaggctggtattggtgaaatgttcgaggggcatcag
ggtccagtgactggtattaactgccacatggctgtgggacagattgatttctctcatctg
tttgtcacctcttcatttgattggacagtcaaattgtggtccacgaagcacaacaagcct
ctctactcctttgaagacaatgcagactatgtctacgacgtcatgtggtcaccagtgcat
cctgcactatttgcctgtgtggatgggatgggacgattagacctctggaacctcaataat
gacacagaggtaccaacagcaagtgcaacagtcgagggaacatcggcactaaacagagtc
agatgggcatcgactggcagagaggtggctgtgggagattcagaaggacatgtatgggtt
tatgatgtcagtgagcaattggcagtcccacacagtgatgaatgggcttgttttgctcgg
accctggtggagatccgggctaaccgggcagatgctgaagagggaagtgtagttgaactg
tctgcacagctgtaa
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