Leucoraja erinaceus (little skate): 129713578
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Entry
129713578 CDS
T09122
Symbol
vps50
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
leri
Leucoraja erinaceus (little skate)
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
leri04131
]
129713578 (vps50)
Membrane trafficking [BR:
leri04131
]
Protein recycling
Others
EARP complex
129713578 (vps50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
129713578
NCBI-ProteinID:
XP_055518716
LinkDB
All DBs
Position
2:complement(106549533..106667760)
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AA seq
966 aa
AA seq
DB search
MQKIKSLMSRQGLKSPQESVPEIKSPVENFRIPSKEELRELRENPTDPQAEQEIINSIEE
IYFSNDSFDVVEHELQKLPSVLNLHDLEEYRDKLKQQQAVVSKKVADLILEKQAAYVKEL
ERVTSLQTNLQLAAVICTNARRQLNIAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKT
LQRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDV
ALSKTCKHFEVGHYTKVQLAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGN
SDTKFQKLQYRDLCTHITPDSYIPCLSDLCKALWEVMLSYYRTMSWHEEHDNEESTPASD
GHSDLKTDDPNFNRSYVKKKLEHGLSRIWQDVQLKAKTYLLGTDLSNFKYDDFIFVLDII
SRLMQVGEEFCGSKSEVLQESIRKQSVNYFKSYHRIRLEELRMFLENETWELCPVKSNFS
ILQLHEFKFMQQSRSPSVSPSKQYTSSSAAAAGSLFDQYQNGGNPFEQQTDNKDDETEDV
LAANGYESDELEKSVYQDDDSDSDVPEELKRDYVDEQTGDVPLKSVSKETLKIRKKSDYY
LNKGNTLILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHCMSQLFDYYLYAVYTFFGRED
MYESTGLGLISSRLRTTLSRIQESLIDLEAPSETSGSLTTTEERKEKVPSPHLSHLVVLN
SAETLYGLAERVVATESLVFLADQFECLQPHLDAMMPSAKKPFLQQFYSQTVSTASELRK
PIYWIVAAKAIDYEQMLHLMASVKWDIKEIMSQHNVYIDTLLKEFEHFHKKLSEVSKRVR
IPFQVSNVLWEHCIRLANRTIVEGYANVKKCSNEGRALMQLDFQQFLMKLEKLTDIRPIP
DKEFVETYIKAYYLTENDMERWIKEHREYSSKQLTNLVNACLGSHINKKARQKLIAAIDE
PERLKR
NT seq
2901 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaaataaagtctctcatgtcccgtcagggcctgaaaagcccccaagaaagtgtg
ccagagattaaatctcctgtcgaaaactttcgaatccccagcaaggaagaactgagggag
ttgagagaaaatcccactgaccctcaagcagaacaagaaattattaacagcattgaagaa
atctatttcagcaatgattcatttgatgttgtggagcatgaactgcagaaactcccatct
gttctcaatcttcacgacctagaagagtatagagataagctaaaacagcagcaagcagtt
gtgtcaaagaaagtagcagatttaatccttgagaagcaagctgcatacgtgaaggagcta
gagagagttacatcactacaaactaatcttcaattggcagctgtcatttgtacaaatgcc
agaaggcagttaaatattgcaaaggaaggattcacacaagctagcctggggctacttgct
aatcaaagaaaaagacagctgctgattggactgctgaagtctttgcgcacaattaaaaca
ctgcaaagaactgacgtacgcttaagtgagatgttagaggaagaagattatcctggtgca
atacagctctgtttggaatgtcagaaagcagctagcacgtttaaacactacagttgcata
agtgaactgaattcaaaattacaagatacattggaacaaattgaggaacaattagatgta
gcactgtcaaaaacctgcaagcactttgaagttggtcattataccaaagtccaacttgca
tatagactactgggaaaaacgcagactgcaatggatcaattacatatgcacttcactcag
gcaattcataacacggtgtttcaggttgttcttggatatgtggaattgtgtgcgggaaat
tctgacactaagtttcagaaactccaatacagagacctttgtacgcatataactccagac
agctacattccctgtctctccgatctgtgtaaggccctgtgggaagtcatgctgagttac
tatcggaccatgtcatggcatgaagaacatgacaatgaagagtctactccagcatctgat
ggccatagtgacctaaaaacagatgatcctaactttaatcgaagttatgtaaaaaagaaa
ttagaacatggtctatcacgtatttggcaggacgttcaattgaaagccaaaacatacttg
cttggaacagatttatccaacttcaagtatgatgattttatttttgtactggatattatt
agcagattgatgcaagttggtgaagaattctgtggcagtaaatcagaagtgttgcaggaa
tctattcggaaacaaagtgtgaattattttaaaagttatcacagaatacgccttgaagaa
ttacgtatgtttttagaaaatgaaacttgggaattgtgtcctgtgaagtctaacttcagt
attttacaattgcatgagtttaaatttatgcagcagtcacgctctccttcagtgtcgcct
agcaagcaatatacatcgtcatctgcagcagcagcaggttcactatttgaccaataccaa
aatggtggaaatccatttgaacagcagactgataacaaggatgatgaaacagaggatgtt
cttgctgctaatgggtatgaatctgatgagttggagaagagtgtttatcaagacgatgac
agtgacagtgatgttccagaagagcttaaaagggactatgtagatgagcaaactggagac
gtccccctgaaaagtgtttccaaagaaactctgaaaattagaaagaaatcagactactat
ctgaacaagggcaatacactcattttaacaaatactaccttgaatgtaataaggcttgtt
ggaaagtacatgcagatgatgaatatactaaagccgattgcttttgatgtgatccactgt
atgtcacaactctttgattattatctatatgcagtatataccttctttggccgggaagac
atgtacgagtccacaggactaggattaatcagcagcagactacggaccacactgagtaga
atacaagaaagccttatcgatctggaggcaccatctgaaacatctggctccttgacaacg
acagaggagaggaaagaaaaggttccaagcccacatctcagtcatcttgttgttctaaat
tcagctgaaacattatatggtcttgcagaaagggtggtggctacagaatctttggtgttt
ctggctgatcagtttgaatgtttgcaacctcatcttgatgcaatgatgccttcagctaag
aagccttttttgcaacagttttattcacagactgtgtccactgccagtgagctgcgcaaa
ccaatttactggatagtggctgctaaagcgatcgattacgaacagatgctgcatcttatg
gctagtgtgaaatgggatattaaagaaatcatgtcacaacacaatgtgtacatagatact
cttctcaaggagtttgaacattttcataagaagttatctgaagtttccaaacgggtacgt
ataccgttccaagtgtccaatgtcctttgggagcattgtatccggctggcaaacagaact
atagtagaaggttatgccaatgtgaaaaaatgcagtaatgagggacgggctttgatgcaa
ttggacttccagcagtttttaatgaagctggagaaactgacagacatcagaccaattcct
gataaagagtttgtggaaacctatattaaagcctattatctaacagaaaatgatatggag
cggtggatcaaagagcacagggaatattcatccaagcagttaaccaaccttgtgaatgca
tgtctcggctcccatatcaataaaaaagcacggcagaagctgatagcagccattgatgaa
cctgaaagacttaagcgatag
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