Leucoraja erinaceus (little skate): 129713732
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Entry
129713732 CDS
T09122
Name
(RefSeq) probable ATP-dependent RNA helicase DDX17 isoform X1
KO
K13178
ATP-dependent RNA helicase DDX17 [EC:
5.6.2.7
]
Organism
leri
Leucoraja erinaceus (little skate)
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
leri03041
]
129713732
Enzymes [BR:
leri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129713732
Spliceosome [BR:
leri03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
129713732
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
129713732
NCBI-ProteinID:
XP_055518966
LinkDB
All DBs
Position
37:complement(965290..993210)
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AA seq
693 aa
AA seq
DB search
MRGFGGDRDRGRDRGSSNGPRFGGSSSMGKKFGQPGERLRKKKWDMDELPKFEKNFYVEH
PEVVRLTPYDIEDFRRKKEITLKGADCPKPVFQFHHANFPSYVMDVLCSLNFVEPTPIQC
QGFPAALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQ
VQLVAEDYGKSSRIKSTCIYGGAPKGPQIRDLERGVEVCIATPGRLIDFLEAGKTNLRRC
TYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKEVRQLAEDFLREYVQINV
GALELSANHNILQIIDVCQETEKDLKLLHLMEEIMAEKENKTIIFVETKRRCDDLTRRMR
RDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDIKFVINYDYPNSS
EDYVHRIGRTARSTNKGTAYTFFTPGNVKQARELIKVLEEANQAINPKLLQLVDNGRGGG
RGGRSRYRPAGSNPNTMYRDDRDRSRSRSFRDLDGDRRDRGDGGSRFGGQRDSRDATGTL
SKPGFRSAQTGSFGSAMFGQQSIQYPNFTQSGIYGTTNPSVYGVASQTAFGKAGAFPTAS
PGGAFGASGFGTAAAQAVAYASGNFTATASASGGRAPQAAAQFRQNGLAQQPQPLLSQTY
QPGTSLLSFMSQGNYQYTPPPPPPPPTQATTRK
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgagaggtttcggcggagaccgcgatcgtggccgtgaccggggaagcagcaatggccca
cggtttggtggaagctcatcaatgggaaagaagtttggtcagcccggagaacgtcttaga
aagaagaagtgggacatggatgagctgccgaaatttgagaagaatttctatgtggagcac
cctgaagtggttagattaaccccgtatgatatcgaggatttccgtcggaagaaagaaatt
actttgaagggagctgactgcccaaaaccagtgttccagtttcatcatgccaattttcct
tcttatgtgatggatgttctgtgttcactgaattttgtggagccgacaccaatacagtgc
cagggctttcctgcagcgctcagtgggcgtgatatggttggaattgcacagactggatct
ggcaaaacgctcgcttacttattgcctgccattgtgcatatcaaccaccagccattcctg
gagcgaggcgacggtcccatttgcttggtgttggcaccaacacgtgagctggcacagcag
gtgcagctggttgctgaagactatgggaaatcttcacggataaagagtacatgtatttat
ggcggtgctcccaaaggccctcaaatccgagacctggagagaggagtggaagtctgcatt
gcaaccccaggccgtttgattgactttttggaagctggaaagaccaatcttcgtcgttgc
acttacctagtacttgatgaagctgatcgcatgctggatatgggctttgagccgcaaatt
cgcaaaatcgtggagcagatcaggccggatagacagactttgatgtggagtgccacttgg
ccaaaagaggtccggcagctggcagaggacttcttacgggaatatgtccagatcaatgtc
ggagccctggaactgagtgccaatcacaacatcctccaaattattgatgtgtgtcaggaa
accgagaaggacttgaagctgctccatctgatggaggaaattatggcagagaaagaaaac
aaaacgatcatctttgtagaaactaaacgtcgttgtgatgacctgacccgcaggatgagg
agagacggctggccggcaatgtgcattcatggagataaaagtcagccggagagagattgg
gtccttaatgaattccgatcaggaaaggcacccatcctaattgcaactgatgttgcatct
cgaggtttagatgtggaagacatcaaatttgtcatcaattacgactaccctaattcctca
gaagactacgtacatcgcattggccgtacagcgcgcagcacaaataaaggcacggcttac
accttcttcacaccaggcaatgtgaaacaggctagggagctgatcaaagtattggaagag
gccaaccaagctattaatcctaaacttctgcagcttgttgataatggaagaggaggtgga
agaggaggccgttcccgttatcggcccgctggatccaatcctaacaccatgtaccgagat
gatcgagacagaagccgcagccgatcttttcgagacctggatggggaccgcagagatagg
ggagatggtgggagcaggtttggggggcagagagattcccgtgatgctacaggtacattg
agtaagccgggtttccggtctgcacaaactggcagttttggaagtgccatgtttgggcaa
cagtcaatccagtacccaaactttacccaaagtgggatatatgggacaactaacccgagt
gtatacggggttgcgtctcagactgcatttggaaaagcaggtgcattcccaactgcaagc
ccaggaggtgcttttggagcctccgggtttggcacagctgctgcccaagctgtggcttac
gcctcgggtaacttcactgctacagcctctgccagtggagggcgggccccgcaggcagca
gcacagttccgacagaatggattggcacaacagccacagcccctgctatctcagacgtat
caaccgggcacctcgttgttgagttttatgtcccaggggaactaccagtacacaccacca
cccccaccacctcccccaacacaggcaacaactcgaaaataa
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