Leucoraja erinaceus (little skate): 129713821
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Entry
129713821 CDS
T09122
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM56-like
KO
K12026
tripartite motif-containing protein 56 [EC:
2.3.2.27
]
Organism
leri
Leucoraja erinaceus (little skate)
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
leri04121
]
129713821
Enzymes [BR:
leri01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
129713821
Ubiquitin system [BR:
leri04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
129713821
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4
zf-RING_UBOX
NHL
zf-C3HC4_3
zf-B_box
zf-RING_2
zf-RING_5
zf-C3HC4_2
zf-C3HC4_4
RING_XB3-XBAT31
SATase_N
OspE
Motif
Other DBs
NCBI-GeneID:
129713821
NCBI-ProteinID:
XP_055519115
LinkDB
All DBs
Position
37:5505994..5509888
Genome browser
AA seq
650 aa
AA seq
DB search
MAMSGDITDQIQNDLLNCKICLSRFIQPKMLPCAHTYCQGCLEKMVRSDRKVQCPECREE
FDVRGGVSKLKTNFHINSLMDIIKSKENEKVVCSWCATAGLSEIAAVARCKTCLKCLCPP
CKLTHGTANPRHVLEDLPGYVAGPCEAETKMQKMIYCQGHPGTLVDHLCNTCNSVICSSC
SSHAHARHSKVSLANAGATARPTVMNLMERLKTDMQSLVQQEDDIVQAMEGMKATERSLM
SMIESTLAEVINNLIKHGDTIKDTLSSYVREQEELYKVARDDIQLKIKKAKDTREFSQGV
LGSGKMREIVCLRSVVEEQIDGLQAPRVPDDKKTRPSLTVNESLKSMLSHSNLFSLTFGE
ESAAKAVAVPAKSPQAYTPLPQPRQRAWNLHWFNTELGGDQYDPALTGVSVSNDGIIVVA
DEDNSLLKCFTDDGHLTATISLPDNNAHPCSVAIFDDTIACSSGNRLYMLDMDGTLLRKL
FLRGYESVYPLAAYRDEYVAVSEGSMCSLSLYNSNGQVVDRVKPYGYEGGRFLFLAINSD
EQFIVVDCGKKCILIFDRDGYIFTTCDQVTMNGVGQAICPYSICTDKDDNIMVTEWNRIL
LFWPNGNFREELLTVANGLHKPRVITVDNYNNLVVTQGNGFITIYQLDLS
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atggccatgtcgggggatattacggatcagatacaaaatgatctattaaactgcaagatc
tgcctcagtaggttcatacagcccaagatgctgccttgtgctcacacctactgccagggg
tgcctggagaagatggttaggtcagaccggaaggtgcagtgcccggagtgcagggaagag
tttgacgtgagaggtggggtcagcaaactcaagaccaactttcacattaacagtctgatg
gatatcatcaagagcaaggagaatgagaaggtggtctgcagttggtgcgcgacagctggt
ctcagcgagattgccgccgtggctcggtgtaaaacctgcctcaagtgcctctgcccgcct
tgcaagctcacccatgggactgccaacccgcgccacgtgctggaggatctgcccggttac
gtcgccggcccttgcgaggcagagacaaagatgcagaagatgatctactgccagggccac
ccaggaaccctggtggaccatctctgcaacacctgcaacagcgtgatctgcagcagttgt
tcctcgcatgcccacgccaggcactcgaaggtgtccctggccaacgcaggggccacagct
agacccacggtgatgaatctcatggagagactgaagactgacatgcagtcgctggtccaa
caggaagacgacatcgtccaggcaatggaggggatgaaggcgacggaaagatcactgatg
tctatgatagagtccaccctggccgaggtcataaacaacttgataaaacatggcgacacc
atcaaggacacgctctccagttacgtcagggagcaggaagaattgtacaaggtcgcgcgg
gatgatattcagctcaagatcaagaaggcgaaggacaccagggaattttcccagggggtc
ctgggttccggtaaaatgagggaaatagtctgcctgcggtccgtcgtggaagaacagatc
gatggactccaagcgccgagggtcccggacgacaagaagacccgccccagcctgaccgtc
aacgagtcgctcaagagcatgctgtctcactccaaccttttcagcctcaccttcggtgaa
gaatcggccgccaaggcagtggccgttccagcaaaaagcccgcaggcctacactcccctc
ccccaacccaggcagagggcgtggaatctacattggttcaacacagagctgggtggtgac
cagtacgatccggcgctgacgggcgttagcgtctccaacgacggcatcatcgtggtggcg
gacgaagacaattcccttctgaaatgcttcaccgacgacgggcacctcactgcgaccatc
tcactgccggacaataacgcacatccatgcagtgttgccatctttgacgacaccatcgcc
tgctcgtctgggaaccggctgtacatgctggacatggacgggactttgctgaggaagctt
ttcctccgcggctacgagtccgtctaccccctcgccgcctacagggatgaatacgtggct
gtgagtgaggggtccatgtgctccctctccctgtacaacagcaacgggcaggtggtcgac
agggtgaagccgtacggctacgagggggggcggttcctcttcctcgccatcaacagcgac
gagcagttcatcgtggtcgactgcggcaagaagtgcatcctgatcttcgacagggatggc
tacatcttcaccacctgtgaccaggtcaccatgaacggggtgggtcaggcgatctgtccc
tacagcatctgcacggacaaagacgacaatattatggtcaccgagtggaaccggatcctc
ttgttttggcccaacgggaacttcagggaggagctgctgaccgtcgccaacggccttcac
aaaccacgtgtcatcaccgtcgacaattacaacaacctggtcgtcacccaaggcaacggg
ttcatcaccatataccagctggacctctcttag
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