Leucoraja erinacea (little skate): 129713982
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Entry
129713982 CDS
T09122
Symbol
pold1
Name
(RefSeq) LOW QUALITY PROTEIN: DNA polymerase delta catalytic subunit
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
leri
Leucoraja erinacea (little skate)
Pathway
leri03030
DNA replication
leri03410
Base excision repair
leri03420
Nucleotide excision repair
leri03430
Mismatch repair
leri03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
129713982 (pold1)
03410 Base excision repair
129713982 (pold1)
03420 Nucleotide excision repair
129713982 (pold1)
03430 Mismatch repair
129713982 (pold1)
03440 Homologous recombination
129713982 (pold1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
leri03032
]
129713982 (pold1)
03400 DNA repair and recombination proteins [BR:
leri03400
]
129713982 (pold1)
Enzymes [BR:
leri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
129713982 (pold1)
DNA replication proteins [BR:
leri03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
129713982 (pold1)
DNA repair and recombination proteins [BR:
leri03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
129713982 (pold1)
MMR (mismatch excision repair)
DNA polymerase delta complex
129713982 (pold1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
DNA_pol_B_2
DNA_pol_B_exo2
Motif
Other DBs
NCBI-GeneID:
129713982
NCBI-ProteinID:
XP_055519397
LinkDB
All DBs
Position
37:complement(12082388..12180115)
Genome browser
AA seq
1112 aa
AA seq
DB search
MEFRRSGSQSKKPYGGRGDSGPQSKRPRAHQEDDVPSQFEEELAYLDEVEAEMTMDAKEV
QPAHDSVPIGNLFSSDVKNSKWQRPPVPKINPKEDSITFQQVELEYYVGTYVAGMPGNRQ
GPVPVTRMFGITMEGNSVCCHIHGFMPYFYVPAPAGFSSEHLHDFQRELNSIVIKDMRSN
KDNISQVVLAVDICLKENMYGYGGNTKTPFLKITMALPRLIAPAKRLLEQGFHFGSMPMS
NYQSYEANIDFEIRFMVDCDVVGCNWIELPAGKYRIREDQPTGHSPKKVTLAQIEVDVAW
TDFVSHAAEGEWQKIAPLRVLSFDIECAGRKGIFPEADKDPVIQIANMVLRQGEKDPFIR
NVFTLRSCASIVGSQVFCFENENELLKAWSEFVRVADPDIITGYNIQNFDMPYLINRAQV
LKVSTFPYLGRIPTLKSVIRDTAFQSRQMGRRENKVINTEGRVQFDLLQVLLRDYKLRSY
TLNAVSFHFLQEQKEDVQHSIITDLQNGNEQTRRRLAVYCLKDAYLPLRLMEKLMCVINY
MEMARVTGVPLSYLLSRGQQIKVVSQLLRQAMKHDLVMPVVKTETGEDYTGATVIEPVKG
YYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAVDKYSFSSDKFIKTPTGDQFVKASVR
KGLLPEILENLLTARKKAKAELKKETDPFKKRVLDGRQLALKVSANSVYGFTGAQVGKLP
CLEISQSVTGFGRQMIEKTKQLVESKYTIANGYKADAKIIYGDTDSVMCKLGTQTVEESM
ALGREAAEWVSSHFIPPIKLEFEKVYFPYLLINKKRYAGLYFSSSPNTHDKMDCKGIETV
RRDNCPLVANLINTCLQKILIDRDPQGAVEHAKDVISDLLCNRIDTSQLVITKELTRTAD
EYTAKQAHVELAERMRKRDAGSAPNLGDRVPYVIISAAKGAAAYMKSEDPIYVLENNIPI
DTQYYLEQQLAKPLLRIFEPILGEAKAEAVLLKGEHTRCKTVLTSKVGGLMAFAKKRITC
IGCKAVLNDGGAVCSYCRSRQSELYQKEISQLKLLEEKFSRLWTQCQRCQGSLHEEVLCT
SRDCPIFYMRKKVQKDLGDQEKVMVRFGPPAW
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atggagtttaggagaagtgggtcgcagtcgaagaaaccgtacggtggtcgtggagacagt
gggccacagtcgaagcggccacgagcacatcaggaggatgacgtgccgtcgcagttcgag
gaggagctggcctatctggatgaggtggaggcagagatgactatggatgccaaggaagta
cagccagcgcacgactctgtgcccattggaaacctgttttcttctgacgttaagaacagt
aagtggcagcggccgccggtaccaaagatcaacccgaaagaggacagcatcacgttccag
caggtggagctcgagtactatgtggggacttatgtcgctggaatgcctgggaataggcag
ggtcccgttcctgttacacggatgtttggaattacaatggaggggaacagtgtgtgctgt
cacatccatggatttatgccatatttctatgtcccggcacctgctggtttcagttcagaa
cacctccatgactttcagcgggagctgaacagcattgtgattaaggacatgaggtcaaac
aaggataacatctctcaagtggtactggcagtcgatatctgtctgaaggagaatatgtac
ggctacggaggaaacacgaaaacaccattcctaaagatcacaatggcactgcctcgccta
attgccccagctaaacggctgctggaacaaggattccactttggttcaatgccaatgagc
aactatcagtcatatgaggccaacattgactttgaaatcagattcatggtggattgcgat
gtcgttggctgtaactggattgaattacccgctgggaaatatcggataagggaagaccaa
cctacagggcacagtcccaagaaggtgacactggcacagatcgaggtagacgtggcctgg
acagacttcgtcagtcacgccgctgagggcgagtggcagaaaatcgctccgctccgtgtg
ctcagcttcgacattgaatgtgccggcaggaagggtattttcccggaggctgacaaggac
cctgtgatacagatcgccaacatggttctgcggcagggggagaaagaccccttcatccgt
aacgtcttcaccctccgctcttgtgccagcattgtggggtcacaggtcttctgcttcgag
aatgagaacgagcttctgaaggcttggtcggagtttgtccgagtggccgaccctgatata
attaccggatacaatattcagaactttgacatgccgtacttgatcaacagagcacaagtg
ctcaaggtgtcaacattcccttatctgggtcgtattcccaccttaaagtcagtaatccgg
gataccgcattccagtcgcgtcagatgggtcgcagggagaacaaagtgatcaacacagag
ggaagagtgcagtttgatctcctgcaggtgctgctgcgagactataaactcaggtcgtac
acactcaacgctgtcagcttccacttcctgcaggaacagaaggaagatgtccagcattcg
attattacagacctgcagaatggtaatgaacagactcgaaggcggctagctgtttactgc
ctgaaggatgcctacctgcccctccggctgatggagaagttgatgtgcgtcattaactac
atggagatggccagagttacaggggtacctctctcctacctcctctcacgtggccagcaa
atcaaagtcgtttctcagttgctccgacaggcaatgaagcatgacctggtgatgcctgtg
gtgaagacagagactggagaggactacactggggccactgtcattgaacccgttaaaggt
tattatgatgttccaattgccaccctggatttctcctccctgtacccatccataatgatg
gcacataacctgtgttacaccactctgctgaggccaggggctgtggacaagtacagtttt
tcttcagacaaattcattaagactccaacaggggatcagttcgtcaaggcatcagtcaga
aagggtcttcttccagagattctggaaaatcttttgacggccaggaaaaaggcaaaggca
gaactaaagaaagaaacagacccattcaaaaaaagggtgctggatggtcgacaactagca
ctgaaagtgagtgccaattcagtgtatggcttcactggagcccaggttggcaagttacct
tgcctggaaatatcacagagtgtcactggatttgggcgacaaatgatagagaaaacgaaa
cagctggttgaatcgaagtacaccattgcaaatggctacaaagcagatgccaagattatt
tatggtgacacagattctgtgatgtgtaagctggggacacagacggtggaagaaagcatg
gcactcggtcgagaggcagctgagtgggtctccagtcacttcatcccccctattaaactc
gagtttgaaaaggtgtatttcccatacctgctcatcaacaagaaacgctatgctggtcta
tatttctcttcaagcccaaacacccatgataagatggattgcaaggggatagagacggtg
agacgagataactgcccattggtggccaacctgatcaacacctgccttcagaaaatccta
attgacagggacccccaaggagcagtggagcacgccaaggatgttatttctgatttgcta
tgtaatcggatcgacacctcacagctggtgattaccaaggagctgactcggacggccgat
gagtacacggcgaagcaggcacatgtggagttggcagaaaggatgcgaaagcgagatgcc
gggagcgctcctaaccttggagacagagttccctacgtaatcatcagtgctgcaaaagga
gcggcagcctacatgaagtcggaggatccgatctatgttctggagaacaatattccgatt
gacacgcagtattatttggagcaacagcttgcaaaacctctcttgagaatctttgagccc
atcctgggagaagccaaagctgaggctgtgcttttgaagggagagcacacaagatgcaaa
actgtgctgacgtcaaaggtgggaggtcttatggcctttgcaaagaaaagaatcacatgt
ataggatgcaaagctgttttgaatgatggcggtgctgtctgcagttactgtagatctcgt
caatcagagctgtatcagaaggagatatctcagttgaagctgctggaggagaagttttcg
cgcttgtggacacagtgtcaacgatgtcaaggcagtcttcatgaggaagtactttgcacc
agtcgagattgccccatattctacatgcggaagaaagtgcagaaggacctcggggatcag
gagaaggtgatggtgcggtttggaccaccagcctggtga
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integrated database retrieval system
