Leucoraja erinaceus (little skate): 129714255
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Entry
129714255 CDS
T09122
Name
(RefSeq) LOW QUALITY PROTEIN: sodium channel protein type 4 subunit alpha-like
KO
K04838
voltage-gated sodium channel type V alpha
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri04261
Adrenergic signaling in cardiomyocytes
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09150 Organismal Systems
09153 Circulatory system
04261 Adrenergic signaling in cardiomyocytes
129714255
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
leri04040
]
129714255
Ion channels [BR:
leri04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
129714255
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
GPHH
IQ
Motif
Other DBs
NCBI-GeneID:
129714255
NCBI-ProteinID:
XP_055519781
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All DBs
Position
2:112188500..112485752
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AA seq
1955 aa
AA seq
DB search
MALLFVPSGPHCLRRFTCESLAAIERRIAEEQALVARKDHKEEGEEEKPTPHCDLEAGKQ
LPIIYGDVPSKLIGQPLEDLDSFYSNKKTFIVLNKGKTIFRFSATDAVYVLTPFHRVRRI
AIKVLVHALFNIFIMCTILTNCVFMTMSDPKPWTKHVEYIFTGIYTFESLIKILARGFCI
DKFTFLRDPWNWLDFSVILMAYVTEFVKLGNVSALRTFRVLRALKTISVIPGLKTIVGAL
IQSVRKLADVMILTVFCLSVFALIGLQLFMGNLRQKCVRDWRIYNNSTLNETGNYTWPWD
LTYDEFINNDTNHYRLKGRKDPLLCGNNTDAGKCPPGFMCLKAGKNPDYNYTSFDSFGWA
FLSLFRLMTQDFWENLYQQVSARTGGTMLFFVVVIXMINLILAVGSXGATIAVAKEKEFQ
SRGDLGHLQFLASTNLCEHVPQELNRLGHETLSRTSSERSHLSAKSNKERSFKSRNGKEL
GISETAKGPRSASEEGLPRKPLLAPILTNHHPLRRGSIFRFRTHSVDAAVENTFSDDEGS
VFDESESVRSSLCLPQLNRTNSNQSHGSQRSVAGGRRKLHSAVDQNGVVSVVGGSPSSPQ
STLRLPQVTVDKPFNDDNQTSLSDNETSKCQLLTDHRVSVSYLEESHQRERAVSAASIIT
NTMEELEDSRLKYPQCWYYFSQTFLIWNCCPMWIKTKKIMKYIVMDPFLDLAITICIVLN
TLFMALEHQPMSDEFNNMLQVGNLVFTAIFTAEMVMKIIALDPYYYFQQGWNIFDSIIVC
LSLIELGLAKVDGLSVLRSFRLLRVFKLAKSWPTLNTLIKIIGNSMGALGNLTLVLAIIV
FIFAVVGMQLFGKKYKVEFCKVPEKCQLPRWHMHDFFHSFLIVFRVLCGEWIETMWDCME
VAGQPLCIVVFMLVMVIGNLVVLNLFLALLLSSFSADNLSSPDEDGEMNNIQMAVARIQR
GIRFVQRAVVEFFQNLCKGSEPPMEGKTVMELPAYVFNHSGSDKRKDSMGKDGNGTAGGL
GNNGTAVGKRSEGSVSESLLGDVVPIAVIEPELDTCEDEEMSTFTELAVDEQKLDGVSSC
SEGSTIDLTSKGDEMENNSEHPEEAVDPDDCFTDACVRHFSCCQVNITTGSGRTWWNLRK
TCYKIVEHNWFETFIIFMILLSSGALTFEDVNIDKKPVIKVVLEYLDKVFTYVFVLEMLL
KWVAYGFKKYFTNAWCWLDFLIVAVSVVSLTANALGYAELAAIKSLRTLRALRPLRALSR
FEGMRVVVNALVGAIPSIMNVFFVCLIFWLIFSIMGVNLFAGKFYKCKNTTSGDMFPIED
INNRSECEAMNRSDVIWHNEKVNFDNVGLGYLALLQVATFKGWMSIMYAAVDSRNIGEQP
EYEINTYMYVYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKISGQDIFMTEEQKKYYNAM
KKLGSKKPQKPIPRPLNRFQGVIFDLVTKQAFDIIIMILICLNMVTMMVETDNMDSNMER
ILFIINTTFIVLFTTECTLKIIALRQYFFTVGWNIFDFVVVILSIIGLVLSDLIEKYFVS
PTLFRVIRLARIGRILRLIRGAKGIRTLLFALMMSMPALFNIGLLLFLVMFIYAIFGMAN
FAYVKKEDGIDDMFNFETFGNSMICLFQITTSAGWDGLLSPILNTESPDCDPKKENQGTN
IKGDCGNQSVGIVFFVSYIIISFLIVVNMYIAIILENFSVATEESSEPLSEDDFEMFYEV
WEKFDSEATQFIEYSALPDFADALKEPLRVAKPNKLKLIAMDLPMVSGDRIHCLDILFAF
TKRVLGESGEMDALKLQMEDKFMAANPSKISYEPITTTLRRKQEEVSALVIQRAYRRHLL
RRSMRQASFLYRHRASDVNIIVEEAPEKEGLIAAMIKEHYSPELERSETMSSSSSPPSYN
SVTRALGDNVVVKVTDPLMPHDFVSGPDKDRESLV
NT seq
5868 nt
NT seq
+upstream
nt +downstream
nt
atggcactcctgttcgtaccgtcaggacctcactgtctgcgtcggttcacttgcgagtcc
ctggctgccatcgagaggcggatcgctgaggagcaagcgctcgtcgccaggaaggatcac
aaagaggagggtgaggaggaaaagcccactccacactgtgacctggaggcgggcaaacag
ctgcccatcatctacggcgacgtcccatcaaaactcattggtcagccattggaggacctg
gactccttctacagcaacaagaagacatttatagtactcaacaaagggaagaccatcttc
cgatttagtgccactgatgcggtatacgtcctgactccttttcaccgtgttagaagaata
gctattaaagttttagtacatgcattgttcaatatctttataatgtgcactattttgacc
aactgtgtgttcatgacaatgtccgatcccaaaccatggacaaaacacgttgagtacatc
ttcaccggcatttacacttttgaatcattgataaaaatcctggcgagaggattctgcatc
gataagtttacgttccttcgcgatccgtggaactggttggatttcagtgttattttgatg
gcgtatgtaacggagttcgtgaaactcggcaatgtttcagctcttcgtactttcagagta
ttgagggcgttgaaaacgatttcggtcatcccaggcctaaagaccattgttggtgcgttg
atacaatccgtgaggaagctagcggacgtgatgattctgacggtgttctgcctgagtgtc
tttgcgctcatcggcctccagctgttcatggggaacctgcggcagaagtgcgtgcgtgac
tggcggatatacaacaattccacgctcaacgaaacgggcaactacacctggccctgggac
ctgacgtacgacgagttcatcaacaatgacacaaaccactatcggttgaaaggtcgcaag
gatcccttactttgtgggaacaatacagatgcggggaagtgcccccctggcttcatgtgt
ctgaaggcagggaagaaccctgactataactacaccagttttgattcgtttggctgggcc
ttcctctccttgttccggctaatgactcaggatttctgggaaaacctctaccagcaggtc
agtgccagaacgggcgggaccatgctcttcttcgtggtggtcatcnnaatgatcaacctg
atcctggctgtggggtctnngggggccaccatcgctgtggccaaggagaaggagttccag
agcagaggagatctaggacatctgcagttccttgcttcgactaacctttgtgaacacgtt
ccacaggaattgaacagactgggacacgagaccctatcgcgaacctcttctgagagatca
cacctaagtgccaaaagcaacaaggagagaagctttaagagccggaatgggaaagaactg
ggaatatcggaaacagcgaagggaccgaggtcagcatcagaggagggtctaccccgcaag
cctctgctggcgcccatcctcaccaaccaccaccccctgcggaggggcagcatcttccgc
ttccggacgcactcggtggacgccgcggtggagaacacgttctcggacgacgagggcagc
gtcttcgacgagagcgagagcgtcaggagctcgctgtgcctgccccagctcaaccgcacc
aacagtaaccagagccacggcagccagcggtccgtggccggcggccgccgcaagctgcac
agcgccgtggaccagaacggcgtggtgtcggtggtgggaggatcacccagctcaccgcag
agtaccctgcgccttcctcaggtcaccgtcgacaagccattcaacgacgacaatcagacc
tccctgtcggacaacgagacgagcaagtgccagctactgacggatcaccgagtgtcggtg
agttacctggaggagtcgcaccaacgagagcgggcggtcagtgcggccagcatcatcacc
aacaccatggaagagcttgaagattctcggctgaagtatcctcagtgctggtattacttt
tcacaaacttttcttatctggaactgttgtccgatgtggattaaaacaaagaagattatg
aagtacatcgtgatggatcccttcctggacttggccatcaccatatgcatcgtgctcaac
accttgttcatggccctggagcatcagccaatgtccgacgagttcaataacatgctccaa
gtgggaaacctggtcttcactgcgatcttcacggccgagatggtgatgaagatcattgcc
ctggacccttactactacttccagcaggggtggaacatctttgacagcatcatcgtgtgc
ctgagcctgattgagctgggcctggccaaggttgacggtctctctgtgctccgctccttc
agactgctccgagtcttcaagctggcaaaatcatggcccaccctcaacaccctgatcaag
atcatcggcaactccatgggagccctgggcaacctgaccctggtgctggccatcatcgtc
ttcatctttgccgtggttgggatgcaactcttcggcaagaaatacaaggtggagttttgc
aaggtccccgaaaagtgccagctcccccgctggcacatgcatgacttcttccactccttc
ctcatcgtcttccgggtgctgtgcggcgaatggatcgagaccatgtgggactgcatggag
gtggctggccagcccctgtgcatcgttgtcttcatgctggtcatggtgatcggaaacctg
gtggtgctgaacctcttcctggccttgctcctaagttctttcagcgcggacaacctgagc
tctccggatgaggacggcgagatgaacaacatccagatggctgttgccaggatacaacga
ggcatcaggtttgtccaacgcgccgtggtggagttcttccagaacctgtgcaagggctct
gaacctcccatggaggggaagaccgtgatggagctccccgcctatgtcttcaaccacagc
ggctcagacaagcgcaaggacagcatgggcaaggacggcaacgggacggcgggcgggctg
gggaacaacggcacggcggtgggcaagcggagcgagggctcggtctccgagtccctgctg
ggcgacgtggtccccattgcggtgatcgaacccgagttggacacctgtgaggacgaggag
atgagcaccttcactgaattagctgtcgacgagcagaagctggatggagtctccagttgt
tcagaaggaagcaccatcgacctgacgagcaaaggggacgagatggagaacaactctgag
cacccggaggaagcggtggatccagacgactgcttcacggatgcttgtgtccgtcacttc
agctgctgccaggttaacatcaccactggttccgggagaacttggtggaacctgaggaaa
acctgctacaagatcgtggaacacaactggttcgagaccttcatcatcttcatgatccta
ctgagcagtggagccctgacgttcgaagacgtcaacatcgacaaaaagccagtgatcaag
gtggtgctggaatacctggacaaggtgttcacctacgtctttgtgctggagatgcttctc
aagtgggtggcatacggcttcaagaaatatttcaccaatgcctggtgctggctggacttc
ttgattgtggcggtctcagtagtcagcctaacagctaatgccttgggatacgctgaacta
gctgccattaaatcccttcggacactcagagctttgagaccattaagagccttgtcacga
tttgaagggatgagggtggtggtcaacgcgctggtgggcgccattccgtccatcatgaac
gttttcttcgtctgcctcatcttctggctcatttttagcatcatgggggtcaacctgttt
gcgggcaagttctacaagtgcaagaacaccaccagcggggacatgttccccatcgaggat
atcaacaacaggagcgagtgcgaagccatgaaccgctcggacgtcatatggcacaatgag
aaggtcaacttcgacaatgttggcttgggctacctcgccttgctccaagtggcaaccttc
aaaggctggatgagcattatgtacgctgcggtagactcaagaaatatcggtgaacagcct
gaatatgagatcaacacctacatgtacgtctactttgtgatattcatcatatttggatcg
tttttcaccctgaacctcttcatcggtgtcatcattgataactttaaccagcagaagaaa
aagataagtggtcaggacatcttcatgacagaggaacagaagaaatactacaatgcaatg
aagaaacttggctcgaagaagccacagaaacctatcccaaggcctttgaatagattccag
ggagtcatcttcgacttggtcacgaagcaagcctttgacatcatcatcatgatcttgatc
tgcctcaacatggtgacgatgatggtggagacagacaacatggactctaacatggagagg
atcctcttcatcatcaacaccaccttcattgtgctcttcaccaccgagtgcacgctaaag
atcatcgccctcaggcagtacttcttcaccgttgggtggaacatcttcgacttcgtggtg
gtgatcctctccattatcggtctcgtattgtcggacctcatcgagaaatactttgtgtct
cccacactgttccgagtcatccggctggcacggatcgggcggattctgcggctcatccgg
ggggccaaggggatccggaccttgctgtttgccctaatgatgtccatgccggccctgttc
aacatcggcctcctcttgttcctagtcatgttcatctacgccatcttcggcatggccaac
ttcgcctatgtgaagaaggaggacggcatagacgacatgttcaacttcgagaccttcggc
aacagcatgatctgcctcttccagatcaccacgtcggcgggctgggacggcctgctcagc
cccatcctcaacaccgagagcccggactgcgacccaaagaaggagaaccagggcaccaac
atcaagggggactgcggcaaccagtcggtgggcattgtcttcttcgtcagctacatcatc
atctccttcctcatcgtggtcaacatgtacatcgccatcatcctggagaacttcagcgtg
gccaccgaggagagctcggagccgctcagcgaggacgactttgagatgttctacgaggtg
tgggagaagtttgactcggaggccacgcagttcatcgagtactcggccctgccggacttt
gctgacgccctgaaggagccgctgcgtgtggccaaacccaacaaactcaagctgatcgcc
atggacctccccatggtgagcggcgacaggatccactgcctggacatcctcttcgccttc
accaagagggtgctgggtgagtcgggcgagatggacgccctcaagctgcagatggaggat
aagttcatggcggccaacccttccaagatctcctacgagcccatcaccaccaccctgagg
agaaagcaggaggaggtatccgccctggtcatccagagggcctacaggaggcaccttctc
cgccgctccatgaggcaggcttccttcctgtaccgccacagagccagcgacgtcaatatc
atcgtggaggaggcgcccgagaaggaagggctgatcgccgccatgatcaaggagcactac
agccccgagctggagaggtcagagacaatgtcctcctcctcctctccgccatcttataac
agtgtcacccgagcccttggtgacaacgttgtggtcaaggtgactgaccctctcatgccc
catgattttgtgagtgggcccgacaaagacagggagtcgttggtgtaa
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