Leucoraja erinaceus (little skate): 129714371
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Entry
129714371 CDS
T09122
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129714371 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
leri03019
]
129714371 (xab2)
03041 Spliceosome [BR:
leri03041
]
129714371 (xab2)
Messenger RNA biogenesis [BR:
leri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
129714371 (xab2)
Spliceosome [BR:
leri03041
]
Complex B
Other components
Prp19-related factors
129714371 (xab2)
Complex C
129714371 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
TPR_2
Suf
TPR_8
TPR_12
TPR_15
ARM_TT21_C
ARM_TT21
TPR_16
TPR_1
NRDE-2
RPN7
TPR_MalT
LTN1_E3_ligase_6th
Motif
Other DBs
NCBI-GeneID:
129714371
NCBI-ProteinID:
XP_055519901
LinkDB
All DBs
Position
39:complement(11459806..11491493)
Genome browser
AA seq
843 aa
AA seq
DB search
MALKADVVFEEDDLPYEEEIIRNPYSVKCWIRYIEFKHTAPKHMVNMIYERALKELPGSY
KLWYNYLKQRRKQVKGKCITDPGYEEVNNCHERALVFMHKMPRIWLDYCQFQVDQCKITR
TRRTFDRALRALPVTQHYRIWPMYLKFVRQFPVSETAIRVYRRYLKLSPENAEEYIEYLR
SIDRLDEAAVRLAAVVNDELFISKEGRSNYQLWHELCHLISTNPDKVKSLNVGAIIRGGL
TRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIQTVMTVRDFTQVFDSYAQFEESMIA
AKMETTAEMGQTQEDDIDLELRLARFEQLITRRPLLLNSVLLRQNPYNVHEWHKRVKLYE
GKPREIINTYTEAVQTIDPLKATGKPHSLWVSFAKFYEENGQIQDARTIFEKATKVNFKH
VDDLAGVWCEYGEMELRHENYEEALRLLRRATAVPAKKAEYFDSTEPVQNRVYKSLKVWS
MLADLEESLGTFKSTKAVYDRIIDLRIATPQIIINYAMFLTEHNYYEESFKAYERGVALF
RWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPPKFAKTLYLLYAKLEEDYGL
ARHAMAVYERATKAVAPLEQYEMYNIYIKRAAEIYGVTHTRGIYEKSIEVLPDEHARDMC
LRFADMECKLGEIDRARSIYSYCSQLCDPRITPSFWQTWKEFEIRQGNEDTIREMLRIKR
SVQATYNTQVNFMSSQMLKASTNATGTVSDLAPGQSGMDDMKLLEQKAQQIAEEVERERP
KPKGKILFVRSDVTRDELAELTKQANPDEIDIDEDDDGEEEPDEVPLEQKAVPTAVFGGL
KDD
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgaaggccgacgtggtgtttgaagaagatgatctgccatatgaagaagagatt
attcgcaacccttactccgtcaaatgttggatccgttacatagagttcaaacacactgct
cccaaacacatggtgaacatgatctacgaacgggcactcaaagagctccccggcagttac
aagctgtggtacaattacctgaagcaacgacggaaacaggtgaaggggaagtgcatcaca
gaccctgggtatgaggaggttaacaactgtcacgagcgagccctggttttcatgcacaag
atgccgcggatttggctggactactgtcagttccaggtggaccagtgcaagataacaagg
acacgacgtacctttgaccgtgcgctgcgggctctccccgtcactcagcactaccgcatc
tggcccatgtacctgaagtttgtgcgacagttccccgtgtccgagactgccatccgcgtc
tacaggcgctatttaaagctgtcccctgaaaatgcagaggaatacattgagtacctgcgc
tccatcgaccggctggacgaggctgctgtccggcttgctgccgtcgtcaacgatgaattg
tttatctccaaagaagggagatcgaattatcaactgtggcacgaactctgccacctcatc
tcaaccaacccagacaaagtgaagtccctgaatgttggcgctattatccgtggtggcctc
actcgcttcactgaccaactggggaagctctggtgttccttagccgactactacattcga
agtggccatttcgagaaggccagagatgtgtacgaggaggcgattcagaccgtgatgaca
gtccgtgacttcacccaggtgtttgacagctacgcccagtttgaagagagcatgatcgca
gctaaaatggaaacaacggcagaaatgggacaaactcaggaagatgatatcgacctggag
ttgagattggcgcggtttgagcagctgataacgaggcgccccctcctcttgaacagcgtc
ctcctgcggcagaacccctacaatgtgcacgagtggcacaagcgggtgaaactgtacgaa
gggaaaccacgagagatcataaacacttacacagaagccgtgcagactatcgacccgctg
aaggccactgggaagccacattcattatgggtctcctttgcaaagttttacgaagaaaac
ggacagattcaggacgcccggactatctttgagaaagccacaaaagtgaatttcaagcac
gtggatgacttggctggagtttggtgtgagtacggggaaatggagctcaggcatgaaaac
tacgaggaggcgctccgattgctcaggagagctaccgccgtaccagcgaaaaaggccgag
tactttgattcgacagaacctgtccagaacagggtgtacaagtcgctgaaagtctggtcc
atgttagcagatctggaggagagtcttggaacgttcaagtctacgaaggccgtgtacgac
aggattatagatcttcgaattgccacgccccagatcatcatcaactacgcaatgttcctg
acagagcacaactactatgaagaaagtttcaaggcctacgagcgaggggttgccctgttt
aggtggcccaatgtttatgatatttggaacacttacctgaccaagttcatcgatcgatac
ggtgggaagaaactggaaagggcgcgggacctgtttgaacaagctctcgatggatgccca
ccaaagtttgctaaaactctgtacctgctctatgccaagctggaggaggactacggactg
gcccggcacgccatggctgtgtatgagcgagccaccaaggcagtggcgccgctggaacag
tacgagatgtacaacatctatattaaacgggcagctgagatttacggagtcacccacacc
cggggcatttacgagaaatcaattgaggtgctgccagacgaacatgcgcgagacatgtgc
ctgcgttttgccgacatggagtgcaagctgggagagattgaccgggctagatccatctac
tcctactgttcccagctgtgtgatccaaggatcacgccgtcgttctggcagacgtggaag
gagtttgagattaggcaaggtaacgaggatacgattcgggagatgttacggattaaacgc
agcgtacaggctacctacaacacccaggtcaatttcatgtcctcgcagatgttgaaagct
tccaccaacgctacaggcacagtgtctgacctggccccgggacagagtggaatggatgac
atgaagttactggagcagaaagcacagcagatcgctgaggaggttgaaagggaaagaccc
aaacccaaaggcaaaattctgtttgtcaggagtgacgtgacccgggacgagctggcggag
ctgaccaagcaggccaaccccgacgagatagacatcgatgaggatgatgacggggaagag
gagcctgacgaggtacctttggagcagaaggcagtgcccacggctgtgtttggtggtttg
aaggacgactag
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