Leucoraja erinaceus (little skate): 129714761
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Entry
129714761 CDS
T09122
Symbol
smarcc2
Name
(RefSeq) LOW QUALITY PROTEIN: SWI/SNF complex subunit SMARCC2
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
129714761 (smarcc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
leri03021
]
129714761 (smarcc2)
03036 Chromosome and associated proteins [BR:
leri03036
]
129714761 (smarcc2)
Transcription machinery [BR:
leri03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
129714761 (smarcc2)
Chromosome and associated proteins [BR:
leri03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
129714761 (smarcc2)
PBAF complex
129714761 (smarcc2)
GBAF(ncBAF) complex
129714761 (smarcc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Motif
Other DBs
NCBI-GeneID:
129714761
NCBI-ProteinID:
XP_055520565
LinkDB
All DBs
Position
40:complement(31295..99866)
Genome browser
AA seq
1212 aa
AA seq
DB search
MAVRKKDGGPNVKYFESSDTVSQFDNVRVWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGKHVSNAPLTKLPMKCFLDFKAGGALCHILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKTLVQNHCLSRPNIYLNSEIEPKLLSKLKDIIKRHQGTVTEDKSNASHIVYP
IPGSLEDEEWVRPIMKREKQVLLHWGYCPDSYDTWIAASEIEAAVEDPPPIERPRKVHAK
WIMDTDTFNEWMNEEDYEVNDDRSPVVRRKRISAKTLTEEVHSPDSDRRDKKGSAHKKRK
RSPSPSPTPDPKKKNTKKGRSPATPYAKSKRGHREEDQEDLTKDMDEPSPVPNVEEVTLP
KSVNTKKDSESAPVKGGTMTDLGKVRTLPTVLKVNCAFLLQDEEDVSTGNKGEQTKNPEL
HEDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDT
YRLNPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFH
VLADTPSGLVPLQPKAPQTSASQQMLNFPDKNKEKTPDMQNFGLRTDMYAKKNIPKSKAA
ASATREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSEA
SLGPLAFQPIPFSQSGNPVMSTVAFLASVVDPRVASAAAKSALEEFSKMKEEVPSALVEA
HVKKVEDAAKVTGKADPTFGLESSGIAGTTQDEPEKSEEGSDEMKSDAQSADEKKESKDK
EIAGEDENKEKQPDTSKKEEDKGKECEPEKENEKAEVEVADTEREKENKEFQDEGAKKDG
ESEADKKTKLERDVGEGNLSTAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKL
EIKLRHFEELETIMDRERRGCKXLCRLEYQRQQLLSDRQAFHMEQLKYAEMRARQQHFQQ
MHQQQQQQHQLPSGPQASQQPAVIPASVQPVPPAAIQQGTLSQASGDSIAQSISQPQQTP
PTQPPPPQQQQQQQQQQQQQQQQQQQQQQQQAQPPALPHGQPPFPGQQTPNQLMPSNMPV
GMPTNMSGNMAAGIPCVVPANVACSMGSAITENIPVNLPTCMPNPVHDNISSSMSAVVPD
NIGTVPVDLPDSLHPNIPGNINTGSMSLASTPGSAAAQSPAIVAATSPLAEQGAPMQTEL
MTTPAAPVPPSQ
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaagatggaggcccaaatgtgaaatacttcgagtcgtccgacacg
gtgtcgcagttcgacaacgtgcgggtgtggctggggaagaattacaagaagtacatccaa
gcagagccaccaactaacaagtctctctctagcctggttgttcagctgctgcagttccag
gaagaggtgtttgggaaacatgtaagcaatgcaccactcaccaaattgccaatgaaatgc
tttctagatttcaaagcaggtggagctctgtgccatattcttgctgctgcttacaaattt
aagagcgaccaaggatggcgacgctttgattttcagaacccctcccgcatggaccgcaat
gttgaaatgtttatgacaatcgaaaagactctggttcagaaccactgcttgtctcggccc
aacatttatctaaactcggaaattgaacccaagttgctaagcaaactgaaagacattatt
aagagacaccagggcactgttaccgaggacaagtcaaatgcatcacacattgtttacccg
attcctggcagtttggaagatgaagagtgggtgaggccaataatgaaaagggagaagcag
gtcctactacactggggatattgccccgacagttacgatacatggattgcagccagtgaa
attgaggcagcagttgaggaccctccaccaattgaacggccacggaaggtccatgctaag
tggataatggatactgacaccttcaacgaatggatgaatgaggaagattatgaggtgaat
gatgaccgatcccctgttgtacgaaggaaaagaatttccgccaaaacgttaacggaagag
gtgcacagccctgactcggatagaagagataagaaggggagcgctcataaaaagaggaaa
cgttccccgtctccttctccgacacctgaccccaagaaaaagaacaccaagaaaggacgc
agtcctgccacaccatatgccaagtcaaagcgaggacatcgagaggaggaccaagaggat
ctgaccaaggacatggatgaaccttctcctgtccccaacgtagaagaggtcacactaccg
aaaagtgtgaatacaaagaaagattccgagtcggctccagtgaaaggtggaacgatgact
gatctaggtaaggtgaggactttaccaacagtgttgaaagtgaattgtgctttcctgctc
caggatgaggaagatgtttccactgggaacaaaggggaacagaccaaaaatcctgagctg
catgaagacaatgttacagagcagactcaccatatcatcatacccagctatgcagcatgg
tttgactacaacagtgtccatgcaattgagcgcagagctctcccagaattcttcaatgga
aaaaataaatccaagaccccggagatttaccttgcctatcgtaatttcatgattgacacg
taccgtctgaatccacaggagtacctcacgtcaacagcatgtcgtcgtaatctggcagga
gatgtctgtgcaataatgagggtacatgctttccttgagcaatggggacttattaattac
caggtggatgcagagagtcgaccgacacctatgggcccccccccaacgtcgcatttccac
gtcctggcagatacaccttctggactggtgcctcttcagcccaaagctccacagacatct
gcatcccagcaaatgcttaatttcccggataagaacaaagagaagactcctgatatgcag
aactttggactacgtacagatatgtatgcaaagaaaaatattcccaagagtaaagcagct
gctagcgctacccgagagtggactgagcaggagacacttttactacttgaggcactagag
atgtacaaggatgattggaacaaagtctcagaacatgtaggcagtcgcacacaggatgaa
tgcatcttgcattttttgcgtttacccatagaagatccctaccttgaagactcggaggct
tcactaggtccattggcttttcagccaattccattcagccagtctggtaatcctgtcatg
agcactgtggcattcctggcctcggttgtggatcctcgtgttgcatccgcagctgctaaa
tctgcattagaggagttctcaaagatgaaggaggaagtcccctctgctctggtggaagct
catgtaaagaaagtagaagatgctgctaaggttactgggaaggcagacccaacatttggt
ctggagagcagcggaattgcaggaactacccaagatgaaccagagaagtcggaggaaggc
agtgatgaaatgaagtcagatgcccaatcagcagacgagaaaaaagaatcaaaggacaag
gagatagcaggagaagatgaaaataaagagaaacaacctgacacttccaaaaaggaggaa
gacaaaggaaaagaatgtgaaccagagaaagaaaatgaaaaggctgaggtagaagtagca
gacacggagagagagaaagaaaataaagaattccaggatgaaggagcaaagaaggacgga
gaatcagaagccgataagaaaactaaattggaacgggatgttggtgaagggaacttatca
acagcagcagcagcggcactggctgcagctgcagtcaaagcaaagcaccttgctgcagtg
gaggagcggaaaatcaaatcactggttgccctgcttgtggaaacacagatgaagaaactg
gaaatcaagctccgccattttgaagaacttgagaccataatggacagggaaaggagaggc
tgtaagtagctgtgccgtctggagtaccagaggcaacagcttctctcagacagacaggcc
ttccacatggagcagctgaagtatgctgagatgcgggctcggcagcagcactttcaacaa
atgcatcaacagcagcagcaacaacatcaactcccatcggggcctcaggccagccagcag
cctgctgtcattcctgcatctgtgcaacccgtgccacctgctgcaattcagcagggaact
ctgagccaagcttcaggagattccatagcacagtccatttcacagccacagcaaacacca
ccaacgcagccgccaccaccgcagcagcagcagcaacagcagcagcaacagcagcaacag
cagcaacagcagcaacagcaacaacagcagcaggctcaacctccagctcttccccacggc
cagcctccatttccaggtcaacaaactccgaaccaactgatgcccagtaacatgcctgtt
ggcatgcctacgaacatgtctggtaatatggctgctggtataccttgtgtggtaccagcc
aatgttgcatgtagcatgggtagtgccatcacagaaaacatcccagttaatcttcctact
tgcatgccaaacccagtgcatgataatatatccagtagcatgtctgcggttgttcctgac
aacattggtacagtgcctgtagatctgcctgattctttacatcctaacataccaggaaac
atcaacacaggctccatgtctcttgcatccacaccagggtcggcagcagctcaaagccct
gctattgtagctgccacaagcccactggcagagcaaggagctccaatgcagacagagttg
atgactaccccagcagcaccagtccctccgtcacagtga
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integrated database retrieval system
