Leptolyngbya sp. O-77: O77CONTIG1_01346
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Entry
O77CONTIG1_01346 CDS
T04251
Symbol
recJ_1
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
let
Leptolyngbya sp. O-77
Pathway
let03410
Base excision repair
let03430
Mismatch repair
let03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
let00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
O77CONTIG1_01346 (recJ_1)
03430 Mismatch repair
O77CONTIG1_01346 (recJ_1)
03440 Homologous recombination
O77CONTIG1_01346 (recJ_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
let03400
]
O77CONTIG1_01346 (recJ_1)
DNA repair and recombination proteins [BR:
let03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
O77CONTIG1_01346 (recJ_1)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
O77CONTIG1_01346 (recJ_1)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
O77CONTIG1_01346 (recJ_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Toprim
RNase_Y_N
KIF9
FlxA
IcmF-related_N
YlqD
Bap31_Bap29_C
Motif
Other DBs
NCBI-ProteinID:
BAU41536
LinkDB
All DBs
Position
complement(1494416..1497526)
Genome browser
AA seq
1036 aa
AA seq
DB search
MSSPSPLHSRSHRIPSQRWQIADADPERAARLAAVADLSPVLGQVLLNRDIDTPDQAQVF
LNPELMQLASPMDEFPDLAEAVSILQEAIARQQRIAICGDYDADGMTSTALLLRALRSLG
GRVQSEIPSRMKEGYGINHRIVEDFHAQGVRVILTVDNGIAAAGPIGFARDLGMRVIVTD
HHDIPPELPPAHAILNPKLIAESSPYRGLAGVGVAYILAISLAQALGQTQDLTGPLLELF
TLGTIADLAPLTGVNRRWLQRGLRRLPKSQLAGVQALIQVAGVNPEQDALKPEAIGFRLG
PRINAVGRIADPNIVIDLLTTDDPGVALERAMQCEEVNQLRQRLCELIEQEAIALAEAYA
PNLQNDRVLLLVKDGWHHGVIGIVASRLVERYGVPVFIGTYEEGDSTRIRGSARGIPEFN
VFDALQCCADILDKFGGHRAAGGFSLATENLEDVRSRLRIFANMHLQPQHLRPLIEVDAQ
ANLRDLTLDLYQQIDRLHPCGIGNPDPVFWTPNVRVVEQQVIGKDRSHLRVVVSQDDDES
GMKAIAWRWGEYCPLPSPIDIAYRLRLNEWNGQVNVELELIGIRLPGGVPIPDLPAPPPN
SAEPQPSPLSPPAGLAFPFNNRTYTCHITTVEGQRELHIYNPEGQLLATRPKETWGFLGK
SRAEAQPVDVSQPHYFNLIRAALNALEIAEKTDLLKKKDRLLAEKDQHINALTQQLAHLQ
QQLDRLSAEQPQTPRSQTEAEPDHAENQLRRPATIPQPQAQIDTMIDTMQDAVSAEFALE
SALPNQQAGSASPTPSAPVFPQPAFPKPAFPKNIKAHLGKKVWYCLNAQSQQDLQTAQRL
MGESGGETDAAAADYADYAAADYAAVGRSLCAVVLREVVEPFIAALGEYWLEQTGDTQLG
DLSLDPEEFKTPNALHILAMLLAPTWQAIRESALKMPLEPAAVDLYVSAGNPDDEAAADA
RYQVTEFLQTWEHPLAGWMQRDPTAAASLLAQVGQLAHGTLEQGRSRYAWQISLLQQKIL
GQSSESGLLQSIYGGL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
gtgtcctccccctcccccctccattcccgctcccaccgcattcccagccagcgctggcaa
attgcggatgccgatccggagcgggcggcgcggctggcggcagtggccgacctcagcccc
gtgctggggcaagtcttgttgaatcgggatatcgacacgcccgatcaggcgcaggtattt
ctcaatccagaactgatgcagttggcctcgccaatggacgagtttcctgacctggcagag
gcggtgagcattttgcaggaggcgatcgcccgacagcagcgaatcgccatctgcggcgac
tacgatgccgacggcatgaccagcacggcgctattgttgcgggcgctgcgatcgctcggt
gggcgcgtccagtcagaaattcccagccgcatgaaagagggctacggcatcaaccatcgc
atcgtcgaagactttcatgcccagggcgtgcgggtgattttaactgtagacaacggcatc
gcggcggcggggcccattggctttgcccgcgatctgggaatgcgcgtcatcgtcaccgat
caccacgacattccgccagaactcccccccgcccatgctattctcaaccccaaattaatc
gccgaaagttcgccctatcgagggctggccggcgtgggcgtggcttacatcctagcgatc
tcattggcgcaagcgctagggcaaacccaggatcttaccgggccactgctggagctattt
accctgggcacaatcgccgatctagcgcccttaacgggggtaaatcggcgctggctgcaa
cgggggctgcggcgactacccaagtcgcaattggcaggcgtacaggctttgatccaggtg
gctggcgtgaatccagagcaggacgcgctgaagccagaagccattgggtttcgtctgggg
ccgcggatcaacgccgtggggcgtattgccgacccaaatatcgtcatcgacctactgacg
acagacgatccgggcgtggcgctggagcgagcgatgcagtgcgaagaagtaaaccaactg
cggcagcggttgtgcgaactgatcgaacaggaggcgatcgcccttgccgaggcctacgcg
ccaaacctgcaaaacgaccgcgtactgctgctggtgaaggacggctggcatcatggggtg
attggcatcgtcgcatcgcggctggtggagcgctacggcgtgcccgtgttcattggcact
tatgaagaaggcgactcgacgcggattcgcggctcggcgcggggcatccccgaattcaac
gtgttcgacgcgctgcaatgctgcgccgatatcctcgacaagtttggcggacaccgggcg
gccggcggtttttccctggccacagagaacttggaggacgtgcgatcgcgcctgcgaatc
ttcgccaacatgcacctgcaaccccagcacctgcgcccgctgatcgaagtcgatgcccag
gccaacctgcgcgacctcaccctcgacctgtatcagcagattgatcggctccacccttgc
ggcatcggcaaccccgaccccgtattttggactcccaatgtccgcgttgtagaacagcag
gtgatcggcaaagaccgctcccatctgcgcgtcgttgtgtcccaggacgatgacgagtcc
ggcatgaaggcgatcgcctggcgttggggcgaatattgccccctacccagtcccattgac
atcgcctaccgcctccgcctcaacgagtggaacggtcaggtcaatgtcgagctagaactc
atcggcatccgtcttcctggcggcgttcccatcccagatttgccagcccctccgcctaac
tcggccgaaccccagcccagcccactctcccctcctgctggactcgccttccccttcaac
aaccgcacctacacctgccacatcaccaccgtagagggccagcgggaactgcacatctac
aatcctgaagggcagcttttggccactcgccccaaagaaacctggggatttttgggcaag
agccgtgccgaggctcaacctgtggatgtctcccagccgcactatttcaacctgattcgc
gccgccctcaacgcgctggaaatcgcggaaaagaccgatctgcttaaaaaaaaagatcga
ctcctagctgaaaaagaccagcacatcaacgcgctcacccagcagcttgcccatttgcag
cagcagttagaccgtctctccgccgaacagccgcagactccgcgctcccagaccgaggcc
gaaccggatcacgccgaaaatcaactgcgccgaccagccaccatcccacaaccgcaagcc
caaatcgacacaatgatcgacacaatgcaggatgcggtctcggcggaatttgcgttggaa
tctgcattaccgaatcagcaggcgggttctgcaagcccaacgcccagcgccccagtcttt
cctcaacctgctttccccaaacctgcatttcccaaaaacataaaagcgcaccttggcaag
aaagtctggtattgcctcaatgcccaaagccagcaggacttacaaacggctcaacggctg
atgggcgagtctgggggagaaacggacgctgccgcagcggattatgccgattatgctgct
gccgattatgctgccgtggggcgatcgctctgtgcggttgtgctgcgggaagtcgtcgag
ccgtttatcgccgcgctgggtgaatattggctagagcagacaggcgacacgcagcttggc
gacctttcgctcgatccagaggagttcaaaacgcccaacgccctgcatattttggcgatg
ctccttgcgcccacttggcaagccattcgagaatccgcgctgaagatgccgctggaaccc
gccgctgtggatctctacgtctcagcaggcaaccccgacgacgaagccgcagcggatgcc
cgctatcaggttacggagtttctgcaaacctgggagcatccgctggcaggctggatgcaa
cgcgaccccacggccgccgcgagtctgttggcgcaggtcggtcagttagctcatggcacg
cttgagcaagggcgatcgcgctatgcctggcaaatcagcctattgcagcaaaagatttta
ggacagtcctctgaatcggggctattgcaatcgatctatggcggcctgtag
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